SMTL ID : 4wcg.1

The binding mode of Cyprinid Herpesvirus3 ORF112-Zalpha to Z-DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: G.83, R.86 Chain B: G.83, R.86, P.97 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Salt bridges: A:R.86, B:R.86 SO4.2: 3 residues within 4Å: Chain A: S.39, E.40, E.41 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.39, A:E.40, A:E.41 SO4.3: 2 residues within 4Å: Chain B: Q.68, R.69 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.69 Salt bridges: B:R.69 SO4.4: 3 residues within 4Å: Chain B: S.39, E.40, E.41 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.40, B:E.41

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kus, K. et al., The Structure of the Cyprinid herpesvirus 3 ORF112-Z alpha Z-DNA Complex Reveals a Mechanism of Nucleic Acids Recognition Conserved with E3L, a Poxvirus Inhibitor of Interferon Response. J.Biol.Chem. (2015)

Release Date

2015-11-18

Peptides

ORF112: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ORF112