- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- monomer
- Ligands
- 3 x ZN: ZINC ION(Non-covalent)
- 31 x IOD: IODIDE ION(Non-functional Binders)
IOD.4: 3 residues within 4Å:- Chain A: T.300, K.301, Q.304
Ligand excluded by PLIPIOD.5: 2 residues within 4Å:- Chain A: R.84, N.319
Ligand excluded by PLIPIOD.6: 5 residues within 4Å:- Chain A: L.230, H.264, I.267, N.268, K.330
Ligand excluded by PLIPIOD.7: 4 residues within 4Å:- Chain A: F.165, P.166, N.167, F.171
Ligand excluded by PLIPIOD.8: 4 residues within 4Å:- Chain A: I.302, P.303, V.317, K.318
Ligand excluded by PLIPIOD.9: 3 residues within 4Å:- Chain A: G.132, R.148, W.149
Ligand excluded by PLIPIOD.10: 5 residues within 4Å:- Chain A: N.292, H.293, I.385, F.411, R.421
Ligand excluded by PLIPIOD.11: 3 residues within 4Å:- Chain A: R.84, N.319, K.320
Ligand excluded by PLIPIOD.12: 1 residues within 4Å:- Chain A: K.320
Ligand excluded by PLIPIOD.13: 4 residues within 4Å:- Chain A: P.297, H.298, E.341, F.342
Ligand excluded by PLIPIOD.14: 4 residues within 4Å:- Chain A: Q.157, R.196, A.198, Q.199
Ligand excluded by PLIPIOD.15: 3 residues within 4Å:- Chain A: A.142, M.143, R.148
Ligand excluded by PLIPIOD.16: 6 residues within 4Å:- Chain A: H.63, Y.64, S.65, K.253, R.254, D.255
Ligand excluded by PLIPIOD.17: 3 residues within 4Å:- Chain A: K.119, P.120, N.121
Ligand excluded by PLIPIOD.18: 4 residues within 4Å:- Chain A: L.184, E.188, L.228, S.232
Ligand excluded by PLIPIOD.19: 4 residues within 4Å:- Chain A: F.256, S.262, A.265, L.266
Ligand excluded by PLIPIOD.20: 3 residues within 4Å:- Chain A: A.37, P.38, K.164
Ligand excluded by PLIPIOD.21: 4 residues within 4Å:- Chain A: N.85, F.324, K.326, L.331
Ligand excluded by PLIPIOD.22: 5 residues within 4Å:- Chain A: R.34, H.39, L.70, N.121
- Ligands: NA.36
Ligand excluded by PLIPIOD.23: 4 residues within 4Å:- Chain A: Y.139, N.145, P.146, K.147
Ligand excluded by PLIPIOD.24: 4 residues within 4Å:- Chain A: P.51, L.230, N.329, K.330
Ligand excluded by PLIPIOD.25: 4 residues within 4Å:- Chain A: E.159, K.161, P.166, N.167
Ligand excluded by PLIPIOD.26: 2 residues within 4Å:- Chain A: M.359
- Ligands: ZN.3
Ligand excluded by PLIPIOD.27: 3 residues within 4Å:- Chain A: K.350, M.359
- Ligands: ZN.3
Ligand excluded by PLIPIOD.28: 3 residues within 4Å:- Chain A: K.301, P.303, Q.304
Ligand excluded by PLIPIOD.29: 4 residues within 4Å:- Chain A: S.20, K.79, P.80, L.83
Ligand excluded by PLIPIOD.30: 3 residues within 4Å:- Chain A: N.259, P.260, S.261
Ligand excluded by PLIPIOD.31: 3 residues within 4Å:- Chain A: Y.107, P.108, Q.111
Ligand excluded by PLIPIOD.32: 5 residues within 4Å:- Chain A: K.350, D.357, Q.358, M.359
- Ligands: ZN.3
Ligand excluded by PLIPIOD.33: 2 residues within 4Å:- Chain A: N.249, P.251
Ligand excluded by PLIPIOD.34: 2 residues within 4Å:- Chain A: A.170, N.174
Ligand excluded by PLIP- 1 x API: 2,6-DIAMINOPIMELIC ACID(Non-covalent)
API.35: 15 residues within 4Å:- Chain A: N.94, R.95, H.127, H.129, W.149, I.154, D.156, M.204, A.207, L.208, T.209, F.210, A.221, E.223
- Ligands: ZN.2
15 PLIP interactions:15 interactions with chain A- Hydrophobic interactions: A:W.149, A:A.221
- Hydrogen bonds: A:N.94, A:L.208, A:T.209, A:T.209, A:E.223
- Water bridges: A:R.95, A:T.197, A:T.209, A:F.210
- Salt bridges: A:R.95, A:H.127, A:H.129, A:H.129
- 1 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chan, A.C. et al., Helical Shape of Helicobacter pylori Requires an Atypical Glutamine as a Zinc Ligand in the Carboxypeptidase Csd4. J.Biol.Chem. (2015)
- Release Date
- 2014-12-24
- Peptides
- Conserved hypothetical secreted protein: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- monomer
- Ligands
- 3 x ZN: ZINC ION(Non-covalent)
- 31 x IOD: IODIDE ION(Non-functional Binders)
- 1 x API: 2,6-DIAMINOPIMELIC ACID(Non-covalent)
- 1 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chan, A.C. et al., Helical Shape of Helicobacter pylori Requires an Atypical Glutamine as a Zinc Ligand in the Carboxypeptidase Csd4. J.Biol.Chem. (2015)
- Release Date
- 2014-12-24
- Peptides
- Conserved hypothetical secreted protein: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A