SMTL ID : 4wd0.1

Crystal structure of HisAp form Arthrobacter aurescens

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-hexamer

Ligands

12 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain A: I.207, V.229, G.230, K.231, A.232 Ligand excluded by PLIP CL.2: 5 residues within 4Å: Chain A: K.85, V.86, V.106, A.107 Chain E: K.178 Ligand excluded by PLIP CL.5: 5 residues within 4Å: Chain B: I.207, V.229, G.230, K.231, A.232 Ligand excluded by PLIP CL.6: 5 residues within 4Å: Chain B: K.85, V.86, V.106, A.107 Chain F: K.178 Ligand excluded by PLIP CL.9: 5 residues within 4Å: Chain C: I.207, V.229, G.230, K.231, A.232 Ligand excluded by PLIP CL.10: 5 residues within 4Å: Chain C: K.85, V.86, V.106, A.107 Chain D: K.178 Ligand excluded by PLIP CL.13: 5 residues within 4Å: Chain D: I.207, V.229, G.230, K.231, A.232 Ligand excluded by PLIP CL.14: 5 residues within 4Å: Chain B: K.178 Chain D: K.85, V.86, V.106, A.107 Ligand excluded by PLIP CL.17: 5 residues within 4Å: Chain E: I.207, V.229, G.230, K.231, A.232 Ligand excluded by PLIP CL.18: 5 residues within 4Å: Chain C: K.178 Chain E: K.85, V.86, V.106, A.107 Ligand excluded by PLIP CL.21: 5 residues within 4Å: Chain F: I.207, V.229, G.230, K.231, A.232 Ligand excluded by PLIP CL.22: 5 residues within 4Å: Chain A: K.178 Chain F: K.85, V.86, V.106, A.107 Ligand excluded by PLIP

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: E.13, L.14, E.55, L.244, G.248, R.249, R.250 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:L.14, A:L.14, A:E.55, A:G.248, A:R.250, A:R.250 GOL.7: 7 residues within 4Å: Chain B: E.13, L.14, E.55, L.244, G.248, R.249, R.250 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:L.14, B:L.14, B:E.55, B:G.248, B:R.250, B:R.250 GOL.11: 7 residues within 4Å: Chain C: E.13, L.14, E.55, L.244, G.248, R.249, R.250 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:L.14, C:L.14, C:E.55, C:G.248, C:R.250, C:R.250 GOL.15: 7 residues within 4Å: Chain D: E.13, L.14, E.55, L.244, G.248, R.249, R.250 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:L.14, D:L.14, D:E.55, D:G.248, D:R.250, D:R.250 GOL.19: 7 residues within 4Å: Chain E: E.13, L.14, E.55, L.244, G.248, R.249, R.250 6 PLIP interactions: 6 interactions with chain E Hydrogen bonds: E:L.14, E:L.14, E:E.55, E:G.248, E:R.250, E:R.250 GOL.23: 7 residues within 4Å: Chain F: E.13, L.14, E.55, L.244, G.248, R.249, R.250 6 PLIP interactions: 6 interactions with chain F Hydrogen bonds: F:L.14, F:L.14, F:E.55, F:G.248, F:R.250, F:R.250

6 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.4: 6 residues within 4Å: Chain A: A.65, G.90, G.91, G.112, T.113, A.114 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:G.90, A:G.91, A:T.113, A:T.113, A:T.113, A:A.114 Water bridges: A:R.93, A:L.111, A:G.112, A:G.112 TRS.8: 6 residues within 4Å: Chain B: A.65, G.90, G.91, G.112, T.113, A.114 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:G.90, B:G.91, B:T.113, B:T.113, B:T.113, B:A.114 Water bridges: B:R.93, B:L.111, B:G.112, B:G.112 TRS.12: 6 residues within 4Å: Chain C: A.65, G.90, G.91, G.112, T.113, A.114 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:G.90, C:G.91, C:T.113, C:T.113, C:T.113, C:A.114 Water bridges: C:R.93, C:L.111, C:G.112, C:G.112 TRS.16: 6 residues within 4Å: Chain D: A.65, G.90, G.91, G.112, T.113, A.114 10 PLIP interactions: 10 interactions with chain D Hydrogen bonds: D:G.90, D:G.91, D:T.113, D:T.113, D:T.113, D:A.114 Water bridges: D:R.93, D:L.111, D:G.112, D:G.112 TRS.20: 6 residues within 4Å: Chain E: A.65, G.90, G.91, G.112, T.113, A.114 10 PLIP interactions: 10 interactions with chain E Hydrogen bonds: E:G.90, E:G.91, E:T.113, E:T.113, E:T.113, E:A.114 Water bridges: E:R.93, E:L.111, E:G.112, E:G.112 TRS.24: 6 residues within 4Å: Chain F: A.65, G.90, G.91, G.112, T.113, A.114 10 PLIP interactions: 10 interactions with chain F Hydrogen bonds: F:G.90, F:G.91, F:T.113, F:T.113, F:T.113, F:A.114 Water bridges: F:R.93, F:L.111, F:G.112, F:G.112

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

MICHALSKA, K. et al., Crystal structure of HisAp form Arthrobacter aurescens. To Be Published

Release Date

2014-09-24

Peptides

1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase