SMTL ID : 4wd1.1

Acetoacetyl-CoA Synthetase from Streptomyces lividans

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

22 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 2 residues within 4Å: Chain A: D.13, A.14 Ligand excluded by PLIP EDO.2: 6 residues within 4Å: Chain A: I.17, G.40, Y.41, T.436, L.437 Ligands: EDO.3 Ligand excluded by PLIP EDO.3: 7 residues within 4Å: Chain A: I.22, T.23, Q.26, G.40, Y.41, T.436 Ligands: EDO.2 Ligand excluded by PLIP EDO.4: 2 residues within 4Å: Chain A: W.28, E.61 Ligand excluded by PLIP EDO.5: 5 residues within 4Å: Chain A: P.438, H.440, Q.445, R.515, S.517 Ligand excluded by PLIP EDO.6: 7 residues within 4Å: Chain A: L.9, L.396, F.401, V.439, H.440, G.442, E.443 Ligand excluded by PLIP EDO.7: 5 residues within 4Å: Chain A: A.42, H.45, A.446, P.447, G.516 Ligand excluded by PLIP EDO.8: 3 residues within 4Å: Chain A: W.403, D.406, E.407 Ligand excluded by PLIP EDO.9: 4 residues within 4Å: Chain A: F.63, H.96, L.294, L.328 Ligand excluded by PLIP EDO.10: 4 residues within 4Å: Chain A: Q.130, P.157, Q.158, W.246 Ligand excluded by PLIP EDO.11: 7 residues within 4Å: Chain A: A.177, P.178, D.179, Y.203, Y.205, S.314 Ligands: EDO.12 Ligand excluded by PLIP EDO.12: 7 residues within 4Å: Chain A: Y.312, T.313, S.314, Y.336, D.337, G.338 Ligands: EDO.11 Ligand excluded by PLIP EDO.13: 4 residues within 4Å: Chain A: R.220, L.226, V.229, G.242 Ligand excluded by PLIP EDO.14: 7 residues within 4Å: Chain A: S.421, C.429, F.430, A.431, L.470, D.508, I.520 Ligand excluded by PLIP EDO.15: 7 residues within 4Å: Chain A: V.65, R.66, L.91, N.92, E.95, H.96, R.99 Ligand excluded by PLIP EDO.16: 3 residues within 4Å: Chain A: D.77, G.82 Ligands: CA.23 Ligand excluded by PLIP EDO.17: 5 residues within 4Å: Chain A: F.180, R.188, Y.271, S.272, G.316 Ligand excluded by PLIP EDO.18: 4 residues within 4Å: Chain A: R.99, A.100, P.305, G.330 Ligand excluded by PLIP EDO.19: 3 residues within 4Å: Chain A: D.179, Y.203, Y.205 Ligand excluded by PLIP EDO.20: 3 residues within 4Å: Chain A: G.102, T.103, P.105 Ligand excluded by PLIP EDO.21: 3 residues within 4Å: Chain A: D.633, P.638, L.644 Ligand excluded by PLIP EDO.22: 5 residues within 4Å: Chain A: P.340, G.341, T.345, Y.366, A.369 Ligand excluded by PLIP

2 x CA: CALCIUM ION(Non-covalent)

CA.23: 5 residues within 4Å: Chain A: D.77, T.79, P.81, G.82 Ligands: EDO.16 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.77, A:T.79, A:T.79, A:P.81 CA.24: 3 residues within 4Å: Chain A: E.545, L.547, I.550 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.545, A:L.547, A:I.550, H2O.4, H2O.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mitchell, C.A. et al., The structure of S. lividans acetoacetyl-CoA synthetase shows a novel interaction between the C-terminal extension and the N-terminal domain. Proteins (2015)

Release Date

2015-01-28

Peptides

Acetoacetate-CoA ligase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Acetoacetate-CoA ligase