SMTL ID : 4weo.1

Crystal Structure of a Putative acetoin(Diacetyl) Reductase Burkholderia cenocepacia

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-tetramer

Ligands

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 8 residues within 4Å: Chain A: Q.255, A.256 Chain D: A.256, V.257, N.258, F.265, H.266 Ligands: EDO.9 5 PLIP interactions: 2 interactions with chain D, 3 interactions with chain A Hydrogen bonds: D:N.258, D:N.258, A:A.256, A:A.256 Water bridges: A:K.155 EDO.2: 4 residues within 4Å: Chain A: L.225, T.226, I.228, G.231 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.228 EDO.3: 7 residues within 4Å: Chain B: R.241, L.244, F.245, T.248 Chain C: R.241, F.245, T.248 7 PLIP interactions: 4 interactions with chain B, 3 interactions with chain C Hydrogen bonds: B:R.241, B:T.248, B:T.248, C:R.241, C:T.248 Water bridges: B:F.245, C:F.245 EDO.4: 5 residues within 4Å: Chain A: G.157, F.158, P.159, F.263 Chain B: K.180 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.180 EDO.5: 7 residues within 4Å: Chain B: A.256, V.257, N.258, F.265 Chain C: Q.255, A.256 Ligands: EDO.6 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:A.256, C:A.256, B:N.258, B:N.258 Water bridges: C:K.155 EDO.6: 8 residues within 4Å: Chain B: Q.255, A.256 Chain C: A.256, V.257, N.258, F.265, H.266 Ligands: EDO.5 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain C Hydrogen bonds: B:A.256, B:A.256, C:A.256, C:N.258 Water bridges: B:K.155 EDO.9: 8 residues within 4Å: Chain A: A.256, V.257, N.258, F.265, H.266 Chain D: Q.255, A.256 Ligands: EDO.1 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain D Hydrogen bonds: A:N.258, A:N.258, D:A.256, D:A.256 Water bridges: D:K.155 EDO.10: 3 residues within 4Å: Chain D: R.25, G.26, R.29 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:G.26 Water bridges: D:G.26, D:R.29

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 3 residues within 4Å: Chain C: R.198, T.199, Q.218 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:T.199, C:Q.218, C:Q.218 GOL.11: 3 residues within 4Å: Chain D: R.198, T.199, Q.218 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:R.198, D:T.199, D:Q.218

2 x MG: MAGNESIUM ION(Non-functional Binders)

MG.8: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.12: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.13: 2 residues within 4Å: Chain D: R.232, A.233 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seattle Structural Genomics Center for Infectious Disease (SSGCID) et al., Crystal Structure of a Putative acetoin(Diacetyl) Reductase Burkholderia cenocepacia. to be published

Release Date

2014-09-24

Peptides

Putative acetoin(Diacetyl) reductase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Putative acetoin(Diacetyl) reductase