SMTL ID : 4wfd.1 (2 other biounits)

Structure of the Rrp6-Rrp47-Mtr4 interaction

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-1-mer

Ligands

8 x YT3: YTTRIUM (III) ION(Non-covalent)(Non-functional Binders)

YT3.1: 2 residues within 4Å: Chain A: L.62, D.65 No protein-ligand interaction detected (PLIP) YT3.2: 2 residues within 4Å: Chain A: D.97, D.101 No protein-ligand interaction detected (PLIP) YT3.3: 3 residues within 4Å: Chain A: D.80 Ligands: YT3.4, YT3.6 No protein-ligand interaction detected (PLIP) YT3.4: 2 residues within 4Å: Ligands: YT3.3, YT3.5 No protein-ligand interaction detected (PLIP) YT3.5: 2 residues within 4Å: Chain A: D.77 Ligands: YT3.4 No protein-ligand interaction detected (PLIP) YT3.6: 2 residues within 4Å: Chain A: D.80 Ligands: YT3.3 No protein-ligand interaction detected (PLIP) YT3.7: 2 residues within 4Å: Chain A: E.59 Chain B: E.26 No protein-ligand interaction detected (PLIP) YT3.8: 3 residues within 4Å: Chain C: D.5, D.8, E.11 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schuch, B. et al., The exosome-binding factors Rrp6 and Rrp47 form a composite surface for recruiting the Mtr4 helicase. Embo J. (2014)

Release Date

2014-10-29

Peptides

Exosome complex exonuclease RRP6: A
Exosome complex protein LRP1: B
ATP-dependent RNA helicase DOB1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Exosome complex exonuclease RRP6

Exosome complex protein LRP1

ATP-dependent RNA helicase DOB1

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