- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.34 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x ROP: PROPIONAMIDE(Covalent)
- 8 x HX2: (2R,5R)-hexane-2,5-diol(Non-covalent)(Covalent)
HX2.2: 8 residues within 4Å:- Chain A: P.192, A.195, N.196
- Chain E: L.25, K.37, V.40, V.69, E.71
4 PLIP interactions:2 interactions with chain E, 2 interactions with chain A- Hydrophobic interactions: E:L.25, E:V.69
- Water bridges: A:G.188, A:L.191
HX2.5: 9 residues within 4Å:- Chain A: L.25, P.33, K.37, V.40, L.41, V.69, E.71
- Chain E: P.192, N.196
10 PLIP interactions:7 interactions with chain A, 3 interactions with chain E- Hydrophobic interactions: A:L.25, A:K.37, A:K.37, A:L.41, A:V.69, A:V.69, A:E.71, E:P.192
- Hydrogen bonds: E:N.196, E:N.196
HX2.7: 8 residues within 4Å:- Chain B: P.192, A.193, A.195, N.196
- Chain H: L.25, K.37, V.69, E.71
4 PLIP interactions:2 interactions with chain H, 2 interactions with chain B- Hydrophobic interactions: H:K.37, H:V.69, B:A.195
- Hydrogen bonds: B:N.196
HX2.11: 9 residues within 4Å:- Chain C: P.192, A.195, N.196
- Chain G: L.25, K.37, V.40, L.41, V.69, E.71
6 PLIP interactions:3 interactions with chain G, 3 interactions with chain C- Hydrophobic interactions: G:L.25, G:K.37, G:V.69, C:P.192
- Hydrogen bonds: C:N.196, C:N.196
HX2.15: 7 residues within 4Å:- Chain D: P.192, N.196
- Chain F: L.25, K.37, V.40, L.41, V.69
7 PLIP interactions:5 interactions with chain F, 2 interactions with chain D- Hydrophobic interactions: F:L.25, F:K.37, F:V.40, F:V.69
- Hydrogen bonds: F:E.71, D:P.192, D:N.196
HX2.22: 8 residues within 4Å:- Chain D: L.25, K.37, V.40, L.41, V.69, E.71
- Chain F: P.192, N.196
5 PLIP interactions:1 interactions with chain F, 4 interactions with chain D- Hydrogen bonds: F:N.196
- Hydrophobic interactions: D:L.25, D:K.37, D:V.40, D:V.69
HX2.27: 8 residues within 4Å:- Chain C: L.25, K.37, V.40, L.41, V.69, E.71
- Chain G: P.192, N.196
8 PLIP interactions:7 interactions with chain C, 1 interactions with chain G- Hydrophobic interactions: C:L.25, C:K.37, C:V.40, C:L.41, C:V.69
- Hydrogen bonds: C:E.71, G:N.196
- Water bridges: C:P.33
HX2.31: 8 residues within 4Å:- Chain B: L.25, K.37, V.40, L.41, V.69
- Chain H: P.192, A.195, N.196
5 PLIP interactions:2 interactions with chain B, 3 interactions with chain H- Hydrophobic interactions: B:K.37, B:V.69, H:P.192, H:A.195
- Hydrogen bonds: H:N.196
- 8 x CL: CHLORIDE ION(Non-functional Binders)
CL.3: 5 residues within 4Å:- Chain A: R.84, P.85, G.86, N.87, N.93
Ligand excluded by PLIPCL.8: 5 residues within 4Å:- Chain B: R.84, P.85, G.86, N.87, N.93
Ligand excluded by PLIPCL.12: 5 residues within 4Å:- Chain C: R.84, P.85, G.86, N.87, N.93
Ligand excluded by PLIPCL.16: 6 residues within 4Å:- Chain A: R.177
- Chain D: R.84, P.85, G.86, N.87, N.93
Ligand excluded by PLIPCL.19: 6 residues within 4Å:- Chain E: R.84, P.85, G.86, N.87, N.93
- Chain F: R.177
Ligand excluded by PLIPCL.23: 5 residues within 4Å:- Chain F: R.84, P.85, G.86, N.87, N.93
Ligand excluded by PLIPCL.28: 5 residues within 4Å:- Chain G: R.84, P.85, G.86, N.87, N.93
Ligand excluded by PLIPCL.32: 5 residues within 4Å:- Chain H: R.84, P.85, G.86, N.87, N.93
Ligand excluded by PLIP- 9 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 2 residues within 4Å:- Chain A: R.7, R.174
2 PLIP interactions:2 interactions with chain A- Salt bridges: A:R.7, A:R.174
SO4.9: 2 residues within 4Å:- Chain B: R.7, R.174
6 PLIP interactions:6 interactions with chain B- Water bridges: B:R.174, B:R.174, B:R.174, B:R.174
- Salt bridges: B:R.7, B:R.174
SO4.13: 2 residues within 4Å:- Chain C: R.7, R.174
4 PLIP interactions:4 interactions with chain C- Water bridges: C:R.174, C:R.174
- Salt bridges: C:R.7, C:R.174
SO4.17: 2 residues within 4Å:- Chain D: R.7, R.174
6 PLIP interactions:1 interactions with chain C, 5 interactions with chain D- Water bridges: C:D.92, D:R.7, D:R.7, D:R.174
- Salt bridges: D:R.7, D:R.174
SO4.20: 2 residues within 4Å:- Chain E: R.7, R.174
2 PLIP interactions:2 interactions with chain E- Salt bridges: E:R.7, E:R.174
SO4.24: 2 residues within 4Å:- Chain F: R.7, R.174
2 PLIP interactions:2 interactions with chain F- Salt bridges: F:R.7, F:R.174
SO4.25: 1 residues within 4Å:- Chain F: R.48
1 PLIP interactions:1 interactions with chain F- Salt bridges: F:R.48
SO4.29: 2 residues within 4Å:- Chain G: R.7, R.174
2 PLIP interactions:2 interactions with chain G- Salt bridges: G:R.7, G:R.174
SO4.33: 2 residues within 4Å:- Chain H: R.7, R.174
8 PLIP interactions:8 interactions with chain H- Water bridges: H:R.7, H:R.7, H:R.7, H:R.174, H:R.174, H:R.174
- Salt bridges: H:R.7, H:R.174
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Grftehauge, M.K. et al., Crystal Structure of a Hidden Protein, YcaC, a Putative Cysteine Hydrolase from Pseudomonas aeruginosa, with and without an Acrylamide Adduct. Int J Mol Sci (2015)
- Release Date
- 2015-07-29
- Peptides
- Probable hydrolase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
H
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.34 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x ROP: PROPIONAMIDE(Covalent)
- 8 x HX2: (2R,5R)-hexane-2,5-diol(Non-covalent)(Covalent)
- 8 x CL: CHLORIDE ION(Non-functional Binders)
- 9 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Grftehauge, M.K. et al., Crystal Structure of a Hidden Protein, YcaC, a Putative Cysteine Hydrolase from Pseudomonas aeruginosa, with and without an Acrylamide Adduct. Int J Mol Sci (2015)
- Release Date
- 2015-07-29
- Peptides
- Probable hydrolase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
H