SMTL ID : 4wgg.1

STRUCTURE OF THE TERNARY COMPLEX OF A ZINGIBER OFFICINALE DOUBLE BOND REDUCTASE IN COMPLEX WITH NADP AND CONIFERYL ALDEHYDE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 28 residues within 4Å: Chain A: P.54, M.137, T.141, A.162, G.165, A.166, V.167, A.186, G.187, K.191, Y.207, N.231, V.232, C.253, G.254, M.255, I.256, S.257, Y.259, F.283, L.284, V.285, L.328, F.329, G.331, N.333 Chain B: V.274 Ligands: CIY.2 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:T.141 Hydrogen bonds: A:D.53, A:A.166, A:V.167, A:G.187, A:K.191, A:Y.207, A:N.231, A:C.253, A:I.256, A:V.285, A:N.333, A:N.333 Water bridges: A:Y.55, A:G.165, A:G.168, A:Y.207, A:F.329 Salt bridges: A:K.191 NAP.3: 24 residues within 4Å: Chain B: P.54, M.137, T.141, A.162, G.165, A.166, V.167, A.186, G.187, K.191, Y.207, N.231, V.232, C.253, G.254, I.256, Y.259, F.283, L.284, V.285, L.328, F.329, G.331, N.333 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:T.141 Hydrogen bonds: B:A.166, B:V.167, B:G.187, B:K.191, B:Y.207, B:N.231, B:C.253, B:I.256, B:Y.259, B:V.285, B:N.333, B:N.333 Water bridges: B:Y.55, B:A.162, B:G.168, B:K.208 Salt bridges: B:K.191

1 x CIY: (2E)-3-(4-hydroxy-3-methoxyphenyl)prop-2-enal(Non-covalent)

CIY.2: 9 residues within 4Å: Chain A: Y.55, M.58, Y.68, Y.259, L.284, V.285, F.286 Chain B: F.271 Ligands: NAP.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.55, A:Y.55, A:Y.68, A:L.284, A:F.286 Hydrogen bonds: A:F.286

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Buratto, J. et al., STRUCTURE OF ZINGIBER OFFICINALE DOUBLE BOND REDUCTASE. to be published

Release Date

2015-09-30

Peptides

Double Bond Reductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Double Bond Reductase