SMTL ID : 4wh5.1

Crystal structure of lincosamide antibiotic adenylyltransferase LnuA, lincomycin-bound

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

homo-dimer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: Q.116, N.117 Chain B: K.156 Ligand excluded by PLIP

4 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: D.47, D.49 Ligands: MG.3, 3QB.4 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.49, H2O.7, H2O.9 MG.3: 6 residues within 4Å: Chain A: G.30, G.31, D.47, D.49 Ligands: MG.2, 3QB.4 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.47, A:D.49 MG.5: 5 residues within 4Å: Chain B: D.47, D.49, D.91 Ligands: MG.6, 3QB.7 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.49, H2O.17, H2O.18 MG.6: 5 residues within 4Å: Chain B: G.30, G.31, D.47, D.49 Ligands: MG.5 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.47, B:D.49, H2O.12

2 x 3QB: LINCOMYCIN(Non-covalent)

3QB.4: 18 residues within 4Å: Chain A: D.29, G.30, G.31, D.49, D.51, H.93, Q.105, F.115, W.119, F.120, I.133, A.137, Q.138, F.141, H.142 Chain B: Y.145 Ligands: MG.2, MG.3 18 PLIP interactions: 17 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:F.115, A:F.115, A:F.115, A:W.119, A:F.120, A:I.133, A:A.137, A:F.141, A:F.141 Hydrogen bonds: A:D.29, A:D.29, A:G.30, A:D.49, A:Q.138, B:Y.145 Water bridges: A:D.91 Salt bridges: A:D.29, A:D.51 3QB.7: 12 residues within 4Å: Chain A: Y.145 Chain B: D.29, D.49, D.51, R.79, D.91, H.93, Q.105, W.119, F.120, F.141 Ligands: MG.5 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:W.119, B:F.120, B:F.141, B:F.141, B:F.141 Hydrogen bonds: B:D.49, B:R.79 Water bridges: B:D.29, B:D.29, B:D.29, B:D.49, B:R.79, B:H.93 Salt bridges: B:D.29, B:D.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stogios, P.J., CRYSTAL STRUCTURE OF LINCOSAMIDE ANTIBIOTIC ADENYLYLTRANSFERASE LNUA, LINCOMYCIN BOUND. To Be Published

Release Date

2014-11-05

Peptides

Lincosamide resistance protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Lincosamide resistance protein