SMTL ID : 4wha.1

Lipoxygenase-1 (soybean) L546A/L754A mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x FE: FE (III) ION(Non-covalent)

FE.1: 6 residues within 4Å: Chain A: H.499, H.504, H.690, N.694, I.837, I.839 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.499, A:H.504, A:H.690, H2O.14

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 10 residues within 4Å: Chain A: V.126, F.144, A.145, N.146, H.147, T.148, V.520, L.521, K.526, W.772 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.147, A:K.526 EDO.3: 5 residues within 4Å: Chain A: D.291, G.295, G.296, I.297, K.298 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.291, A:G.295, A:K.298 EDO.4: 8 residues within 4Å: Chain A: I.412, F.413, P.415, Y.416, M.566, A.569, V.570, N.573 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.412 Water bridges: A:A.569, A:N.573 EDO.5: 7 residues within 4Å: Chain A: N.190, G.223, P.224, P.229, N.230, T.231, E.232 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.190, A:N.230 Water bridges: A:G.223 EDO.6: 10 residues within 4Å: Chain A: T.259, Q.495, H.499, W.500, H.504, I.538, A.542, A.546, I.553, I.839 No protein-ligand interaction detected (PLIP) EDO.7: 6 residues within 4Å: Chain A: M.341, K.471, S.476, T.477, L.480, H.730 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.730 EDO.8: 8 residues within 4Å: Chain A: E.344, A.347, R.438, D.440, T.442, L.443, K.444, P.445 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.438, A:L.443 Water bridges: A:L.443

8 x ACT: ACETATE ION(Non-functional Binders)

ACT.9: 8 residues within 4Å: Chain A: F.286, H.290, Q.337, S.338, W.340, M.341, L.703, M.705 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.286 Hydrogen bonds: A:Q.337, A:W.340 Salt bridges: A:H.290 ACT.10: 9 residues within 4Å: Chain A: S.425, E.554, T.555, T.556, T.709, A.710, R.712, T.739, P.743 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.425 ACT.11: 10 residues within 4Å: Chain A: D.440, G.441, T.442, D.607, S.804, L.805, Q.806, G.807, N.808, R.809 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.807, A:N.808 Water bridges: A:Q.806 ACT.12: 2 residues within 4Å: Chain A: P.664, W.665 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.664, A:W.665 ACT.13: 10 residues within 4Å: Chain A: W.340, M.341, F.346, L.480, K.483, A.484, I.487, M.705, P.708, Y.734 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:K.483 ACT.14: 9 residues within 4Å: Chain A: E.315, L.316, Y.317, R.318, K.326, F.327, P.328, E.752 Ligands: ACT.16 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:R.318, A:P.328 Hydrogen bonds: A:E.752 Water bridges: A:R.318 ACT.15: 6 residues within 4Å: Chain A: L.388, D.389, L.390, D.391, G.392, Y.393 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.389, A:L.390, A:D.391, A:G.392 ACT.16: 8 residues within 4Å: Chain A: E.315, L.316, Y.317, R.318, K.326, F.327, P.328 Ligands: ACT.14 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:R.318, A:P.328 Water bridges: A:E.315, A:Y.317, A:R.318

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, S. et al., Extremely elevated room-temperature kinetic isotope effects quantify the critical role of barrier width in enzymatic C-H activation. J.Am.Chem.Soc. (2014)

Release Date

2014-11-12

Peptides

Seed linoleate 13S-lipoxygenase-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Seed linoleate 13S-lipoxygenase-1

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