SMTL ID : 4whd.1

Human CEACAM1 N-domain homodimer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

8 x BOG: octyl beta-D-glucopyranoside(Non-covalent)

BOG.1: 8 residues within 4Å: Chain A: L.19, L.21, V.22, H.23, Y.69, N.71, S.73 Ligands: BOG.3 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.19, A:Y.69 Hydrogen bonds: A:V.22, A:N.71 BOG.3: 4 residues within 4Å: Chain A: E.6, M.8, H.23 Ligands: BOG.1 No protein-ligand interaction detected (PLIP) BOG.4: 3 residues within 4Å: Chain A: P.9, K.16, E.17 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:P.9, A:K.16, A:K.16, A:E.17, A:E.17 BOG.5: 7 residues within 4Å: Chain B: L.21, V.22, H.23, Y.69, N.71, S.73 Ligands: BOG.11 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:Y.69, B:Y.69 Hydrogen bonds: B:V.22, B:H.23, B:N.71, B:S.73 BOG.8: 2 residues within 4Å: Chain B: E.6, M.8 No protein-ligand interaction detected (PLIP) BOG.9: 9 residues within 4Å: Chain B: P.9, N.11, V.12, A.13, K.16, E.17, Y.108 Ligands: GOL.7, BOG.11 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:P.9, B:K.16, B:E.17 Hydrogen bonds: B:A.13, B:Y.108 BOG.10: 3 residues within 4Å: Chain B: T.67, Y.69, Q.77 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:T.67 Hydrogen bonds: B:Q.77 BOG.11: 5 residues within 4Å: Chain B: M.8, E.17 Ligands: BOG.5, GOL.6, BOG.9 No protein-ligand interaction detected (PLIP)

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 2 residues within 4Å: Chain A: T.67, Q.77 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.67, A:Q.77 GOL.6: 2 residues within 4Å: Chain B: N.11 Ligands: BOG.11 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.11, B:N.11 Water bridges: B:F.10 GOL.7: 2 residues within 4Å: Chain B: Y.108 Ligands: BOG.9 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kirouac, K.N. et al., Human CEACAM1 N-domain homodimer. To Be Published

Release Date

2015-10-07

Peptides

Carcinoembryonic antigen-related cell adhesion molecule 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Carcinoembryonic antigen-related cell adhesion molecule 1