SMTL ID : 4whx.1

X-ray Crystal Structure of an Amino Acid Aminotransferase from Burkholderia pseudomallei Bound to the Co-factor Pyridoxal Phosphate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-hexamer

Ligands

4 x ALA: ALANINE(Non-covalent)

ALA.1: 7 residues within 4Å: Chain A: G.44, Y.102, R.104, K.165, G.202, T.262, A.263 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Ligand interactions Hydrogen bonds: A:G.202, A:T.262, A:A.263, A.1, A.1 Water bridges: A:A.264 ALA.3: 7 residues within 4Å: Chain C: G.44, Y.102, R.104, K.165, G.202, T.262, A.263 6 PLIP interactions: 2 Ligand-Ligand interactions, 4 interactions with chain C Hydrogen bonds: A.3, A.3, C:T.262, C:A.263 Water bridges: C:G.44, C:A.264 ALA.4: 7 residues within 4Å: Chain D: F.42, G.44, Y.102, R.104, K.165, T.262, A.263 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:F.42 Hydrogen bonds: D:G.202, D:T.262, D:A.263 Water bridges: D:G.44, D:A.264 ALA.5: 7 residues within 4Å: Chain E: G.44, Y.102, R.104, K.165, G.202, T.262, A.263 7 PLIP interactions: 7 interactions with chain E Hydrogen bonds: E:Y.102, E:Y.102, E:G.202, E:T.262, E:A.263 Water bridges: E:T.262, E:A.264

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: Y.135, L.136, N.177, D.186, E.187 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.135, A:N.177, A:N.177 EDO.6: 4 residues within 4Å: Chain E: R.46, Y.48, E.138, E.265 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:R.46, E:E.138 Water bridges: E:R.46

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

SSGCID et al., X-ray Crystal Structure of an Amino Acid Aminotransferase from Burkholderia pseudomallei Bound to the Co-factor Pyridoxal Phosphate. to be published

Release Date

2014-10-08

Peptides

Branched-chain-amino-acid transaminase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Branched-chain-amino-acid transaminase