SMTL ID : 4wjl.1

Structure of human dipeptidyl peptidase 10 (DPPY): a modulator of neuronal Kv4 channels

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

homo-dimer

Ligands

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA-MAN.1: 5 residues within 4Å: Chain A: I.158, M.191, N.193, S.195, L.196 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.196

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 6 residues within 4Å: Chain A: N.278, I.279, T.299, S.300, R.553, E.634 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.634 NAG-NAG.3: 3 residues within 4Å: Chain B: N.36, H.38, N.55 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 5 residues within 4Å: Chain B: N.278, I.279, T.299, S.300, E.634 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.634, B:E.634

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA.4: 5 residues within 4Å: Chain B: I.158, M.191, N.193, S.195, L.196 No protein-ligand interaction detected (PLIP)

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.6: 4 residues within 4Å: Chain A: E.45, N.47, Y.448, F.449 No protein-ligand interaction detected (PLIP) NAG.7: 3 residues within 4Å: Chain A: N.36, H.38, N.55 No protein-ligand interaction detected (PLIP) NAG.8: 3 residues within 4Å: Chain B: N.47, Y.448, F.449 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.47, B:Y.448 NAG.9: 2 residues within 4Å: Chain A: K.711 Chain B: N.684 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:N.684, A:K.711

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bezerra, G.A. et al., Structure of human dipeptidyl peptidase 10 (DPPY): a modulator of neuronal Kv4 channels. Sci Rep (2015)

Release Date

2015-03-18

Peptides

Inactive dipeptidyl peptidase 10: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Inactive dipeptidyl peptidase 10