- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.78 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 1 x ARG- GLY- ASP: ARG-GLY-ASP(Non-covalent)
- 1 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG-NAG.3: 8 residues within 4Å:- Chain A: P.15, G.16, S.17, K.41, A.42, N.43, L.50, Q.51
No protein-ligand interaction detected (PLIP)NAG-NAG.4: 5 residues within 4Å:- Chain A: S.241, N.266, S.268, D.269, L.273
No protein-ligand interaction detected (PLIP)NAG-NAG.5: 5 residues within 4Å:- Chain B: W.247, R.248, N.249, R.252, T.431
No protein-ligand interaction detected (PLIP)NAG-NAG.6: 4 residues within 4Å:- Chain B: Y.380, G.384, V.385, N.386
No protein-ligand interaction detected (PLIP)- 6 x CA: CALCIUM ION(Non-covalent)
CA.7: 6 residues within 4Å:- Chain A: E.239, F.240, S.241, D.243, T.245, D.247
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:E.239, A:S.241, A:D.243, A:T.245, A:D.247
CA.8: 7 residues within 4Å:- Chain A: D.293, V.294, N.295, D.297, L.299, D.301, L.328
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.293, A:D.297, A:L.299, A:D.301, H2O.1
CA.9: 6 residues within 4Å:- Chain A: D.360, L.361, D.362, D.364, Y.366, D.368
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:D.360, A:D.362, A:D.364, A:Y.366, A:D.368
CA.10: 7 residues within 4Å:- Chain A: D.424, L.425, D.426, N.428, Y.430, D.432, G.448
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.424, A:D.426, A:Y.430, A:D.432, H2O.2
CA.14: 6 residues within 4Å:- Chain B: S.134, M.135, D.137, D.138, A.342, N.343
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:S.134, B:D.138, B:A.342, H2O.16, H2O.17
CA.15: 5 residues within 4Å:- Chain B: E.169, N.224, D.226, P.228, E.229
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:E.169, B:D.226, B:D.226, B:P.228, B:E.229
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.11: 6 residues within 4Å:- Chain A: N.256, Y.259, Y.261, N.275, S.277
- Ligands: NAG-NAG-BMA-MAN-MAN-MAN.2
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.256, A:S.277
NAG.12: 3 residues within 4Å:- Chain A: P.28, N.141, F.142
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.141
NAG.16: 3 residues within 4Å:- Chain B: K.382, N.383, N.397
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:K.382, B:N.397
NAG.17: 3 residues within 4Å:- Chain B: N.141, N.343, S.345
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.141, B:N.343
- 1 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Xia, W. et al., Metal ion and ligand binding of integrin alpha 5 beta 1. Proc.Natl.Acad.Sci.USA (2014)
- Release Date
- 2014-12-03
- Peptides
- Integrin alpha-5: A
Integrin beta-1: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.78 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 1 x ARG- GLY- ASP: ARG-GLY-ASP(Non-covalent)
- 1 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 6 x CA: CALCIUM ION(Non-covalent)
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 1 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Xia, W. et al., Metal ion and ligand binding of integrin alpha 5 beta 1. Proc.Natl.Acad.Sci.USA (2014)
- Release Date
- 2014-12-03
- Peptides
- Integrin alpha-5: A
Integrin beta-1: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B