SMTL ID : 4wk6.1

Crystal structure of 3-ketoacyl-(acyl-carrier-protein) reductase (FabG) (G141A) from Vibrio cholerae in complex with NADPH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.21 Å

Oligo State

homo-tetramer

Ligands

4 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 9 residues within 4Å: Chain A: G.19, S.21, A.43, T.44, S.45, L.65, N.66, V.67, I.96 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:G.19, A:S.21, A:S.21, A:S.21, A:T.44, A:T.44, A:S.45, A:N.66, A:V.67 Water bridges: A:G.95 NDP.2: 16 residues within 4Å: Chain B: G.19, A.20, S.21, R.22, G.23, A.43, T.44, L.65, N.66, V.67, T.68, A.94, G.95, I.96, T.116, D.194 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:G.19, B:S.21, B:S.21, B:R.22, B:T.44, B:N.66, B:V.67, B:G.95 Water bridges: B:R.22, B:I.24 Salt bridges: B:R.22 NDP.3: 12 residues within 4Å: Chain C: G.19, A.20, S.21, R.22, A.43, T.44, L.65, N.66, V.67, A.94, G.95, I.96 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:G.19, C:S.21, C:S.21, C:T.44, C:T.44, C:N.66, C:V.67, C:G.95 Water bridges: C:G.19 Salt bridges: C:R.22, C:R.22 NDP.4: 11 residues within 4Å: Chain D: G.19, S.21, R.22, A.43, T.44, L.65, N.66, V.67, A.94, G.95, I.96 12 PLIP interactions: 12 interactions with chain D Hydrogen bonds: D:G.19, D:S.21, D:S.21, D:T.44, D:T.44, D:N.66, D:V.67, D:G.95 Water bridges: D:G.19, D:I.24 Salt bridges: D:R.22, D:R.22

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.5: 7 residues within 4Å: Chain C: H.243, N.245, Y.249 Chain D: K.170, E.240, T.241, H.243 7 PLIP interactions: 4 interactions with chain D, 3 interactions with chain C Hydrogen bonds: D:K.170, D:K.170, D:T.241, C:N.245 Water bridges: D:G.239, C:K.170, C:N.245

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hou, J. et al., Dissecting the Structural Elements for the Activation of beta-Ketoacyl-(Acyl Carrier Protein) Reductase from Vibrio cholerae. J.Bacteriol. (2015)

Release Date

2014-11-12

Peptides

3-oxoacyl-[acyl-carrier protein] reductase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

3-oxoacyl-[acyl-carrier protein] reductase

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