SMTL ID : 4wk7.1

Crystal structure of human ADAMTS-4 in complex with inhibitor (compound 1, 2-(4-chlorophenoxy)-N-{[(4R)-4-methyl-2,5-dioxoimidazolidin-4-yl]methyl} acetamide)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.24 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.149, H.153, H.159 Ligands: 3PQ.5 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.149, A:H.153, A:H.159

3 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: E.9, D.92, D.99, C.211, D.214 Ligands: CA.3 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.9, A:D.92, A:D.92, A:D.99, A:C.211 CA.3: 4 residues within 4Å: Chain A: E.9, D.92, D.214 Ligands: CA.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.92, A:D.92, A:D.214, H2O.4, H2O.4 CA.4: 5 residues within 4Å: Chain A: D.108, L.109, C.115, T.117, E.137 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.108, A:L.109, A:C.115, A:T.117, A:E.137, H2O.4

1 x 3PQ: 2-(4-chlorophenoxy)-N-{[(4R)-4-methyl-2,5-dioxoimidazolidin-4-yl]methyl}acetamide(Non-covalent)

3PQ.5: 16 residues within 4Å: Chain A: T.117, L.118, G.119, F.145, T.146, H.149, E.150, H.153, H.159, V.178, A.180, P.181, V.182, M.183, V.186 Ligands: ZN.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:H.149, A:M.183 Hydrogen bonds: A:T.117, A:L.118, A:G.119, A:G.119, A:P.181 Water bridges: A:M.183

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Durham, T.B. et al., Identification of potent and selective hydantoin inhibitors of aggrecanase-1 and aggrecanase-2 that are efficacious in both chemical and surgical models of osteoarthritis. J.Med.Chem. (2014)

Release Date

2014-12-10

Peptides

A disintegrin and metalloproteinase with thrombospondin motifs 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

A disintegrin and metalloproteinase with thrombospondin motifs 4

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