SMTL ID : 4wke.1

Crystal structure of human ADAMTS-4 in complex with inhibitor 5-chloro-N-{[(4R)-2,5-dioxo-4-(1,3-thiazol-2-yl)imidazolidin-4-yl]methyl}-1-benzofuran-2-carboxamide (compound 10)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.149, H.153, H.159 Ligands: 3PU.8 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.149, A:H.153, A:H.159

3 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: E.9, D.92, D.99, C.211, D.214 Ligands: CA.3 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.9, A:D.92, A:D.92, A:D.99, A:C.211 CA.3: 4 residues within 4Å: Chain A: E.9, D.92, D.214 Ligands: CA.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.9, A:E.9, A:D.92, A:D.214, H2O.4 CA.4: 5 residues within 4Å: Chain A: D.108, L.109, C.115, T.117, E.137 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.108, A:L.109, A:C.115, A:T.117, A:E.137, H2O.3

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 5 residues within 4Å: Chain A: Q.142, F.145, A.184, H.185, V.186 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.185, A:V.186 EDO.6: 5 residues within 4Å: Chain A: M.120, A.121, E.150, H.153 Ligands: 3PU.8 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.121, A:E.150 EDO.7: 5 residues within 4Å: Chain A: D.116, L.118, V.182, M.183 Ligands: 3PU.8 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:M.183 Water bridges: A:M.183

1 x 3PU: 5-chloro-N-{[(4R)-2,5-dioxo-4-(1,3-thiazol-2-yl)imidazolidin-4-yl]methyl}-1-benzofuran-2-carboxamide(Non-covalent)

3PU.8: 18 residues within 4Å: Chain A: T.117, L.118, G.119, M.120, F.145, H.149, E.150, H.153, H.159, V.178, A.180, P.181, V.182, M.183, V.186 Ligands: ZN.1, EDO.6, EDO.7 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:H.149, A:M.183 Hydrogen bonds: A:T.117, A:L.118, A:G.119, A:G.119, A:P.181 pi-Stacking: A:H.149, A:H.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Durham, T.B. et al., Identification of potent and selective hydantoin inhibitors of aggrecanase-1 and aggrecanase-2 that are efficacious in both chemical and surgical models of osteoarthritis. J.Med.Chem. (2014)

Release Date

2014-12-10

Peptides

A disintegrin and metalloproteinase with thrombospondin motifs 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

A disintegrin and metalloproteinase with thrombospondin motifs 4

Related Entries With Identical Sequence