SMTL ID : 4wle.1

Crystal structure of citrate bound MDH2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

4 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 11 residues within 4Å: Chain A: R.106, R.112, I.142, N.144, L.174, R.178, H.202, G.236, S.248, A.249, M.253 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:R.112, A:N.144, A:N.144, A:S.248 Water bridges: A:R.178, A:A.249 Salt bridges: A:R.106, A:R.112, A:R.112, A:R.178, A:H.202, A:H.202 CIT.2: 12 residues within 4Å: Chain B: I.38, R.106, R.112, I.142, N.144, L.174, R.178, H.202, G.236, S.248, A.249, M.253 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:R.112, B:N.144, B:H.202, B:S.248 Water bridges: B:R.178, B:G.236, B:A.249 Salt bridges: B:R.106, B:R.112, B:R.112, B:R.178, B:H.202 CIT.3: 11 residues within 4Å: Chain C: R.106, R.112, I.142, N.144, L.174, R.178, H.202, G.236, S.248, A.249, M.253 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:R.112, C:N.144, C:N.144 Water bridges: C:G.236 Salt bridges: C:R.106, C:R.112, C:R.112, C:R.178, C:H.202, C:H.202 CIT.4: 12 residues within 4Å: Chain D: I.38, R.106, R.112, I.142, N.144, L.174, R.178, H.202, G.236, S.248, A.249, M.253 12 PLIP interactions: 12 interactions with chain D Hydrogen bonds: D:R.112, D:N.144 Water bridges: D:R.178, D:G.236, D:S.248, D:S.248, D:A.249 Salt bridges: D:R.106, D:R.112, D:R.112, D:R.178, D:H.202

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Eo, Y.M. et al., Crystal structure of citrate bound MDH2. To Be Published

Release Date

2015-11-25

Peptides

Malate dehydrogenase, mitochondrial: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Malate dehydrogenase, mitochondrial

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