SMTL ID : 4wli.1

Stationary Phase Survival Protein YuiC from B.subtilis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

homo-dimer

Ligands

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: Y.21, A.55, D.79, T.80, G.81, D.90 Ligands: EDO.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.90 Water bridges: A:D.79, A:D.79 EDO.2: 5 residues within 4Å: Chain A: K.105, T.107, L.108, D.109 Chain B: R.15 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.105, A:D.109 Water bridges: A:D.109 EDO.3: 3 residues within 4Å: Chain A: S.133, V.136, F.137 No protein-ligand interaction detected (PLIP) EDO.4: 8 residues within 4Å: Chain A: Y.21, A.23, G.24, G.38, L.39, V.46, D.79 Ligands: EDO.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.24, A:D.79 Water bridges: A:G.38 EDO.5: 7 residues within 4Å: Chain B: Y.21, A.55, D.79, T.80, G.81, D.90 Ligands: EDO.8 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.90, B:D.90 Water bridges: B:D.79, B:D.79 EDO.6: 5 residues within 4Å: Chain A: R.15 Chain B: K.105, T.107, L.108, D.109 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.105, B:D.109 Water bridges: B:D.109 EDO.7: 3 residues within 4Å: Chain B: S.133, V.136, F.137 No protein-ligand interaction detected (PLIP) EDO.8: 8 residues within 4Å: Chain B: Y.21, A.23, G.24, G.38, L.39, V.46, D.79 Ligands: EDO.5 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.24, B:D.79 Water bridges: B:G.38

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Quay, D.H. et al., Structure of the stationary phase survival protein YuiC from B.subtilis. Bmc Struct.Biol. (2015)

Release Date

2015-07-08

Peptides

YuiC: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

YuiC