SMTL ID : 4wlk.1

Stationary Phase Survival Protein YuiC from B.subtilis complexed with reaction product

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

homo-dimer

Ligands

2 x 3QL: N-[(1R,2S,3R,4R,5R)-2-[(2S,3R,4R,5S,6R)-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-3-oxidanyl-6,8-dioxabicyclo[3.2.1]octan-4-yl]ethanamide(Non-covalent)

3QL.1: 16 residues within 4Å: Chain A: Y.42, S.48, T.49, K.51, G.59, L.60, T.61, Y.62, V.67, A.76, D.100, T.101, G.102, S.103, A.104, D.111 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:V.67, A:A.104 Hydrogen bonds: A:S.48, A:T.49, A:K.51, A:L.60, A:D.100, A:S.103, A:A.104, A:D.111 Water bridges: A:R.109 3QL.2: 16 residues within 4Å: Chain A: K.118 Chain B: Y.42, S.48, T.49, K.51, L.60, T.61, Y.62, V.67, A.76, D.100, T.101, G.102, S.103, A.104, D.111 10 PLIP interactions: 9 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:V.67, B:A.104 Hydrogen bonds: B:S.48, B:K.51, B:L.60, B:D.100, B:A.104, A:K.118 Water bridges: B:S.103, B:S.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Quay, D.H. et al., Structure of the stationary phase survival protein YuiC from B.subtilis. Bmc Struct.Biol. (2015)

Release Date

2015-07-08

Peptides

YuiC: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

YuiC