SMTL ID : 4wn3.1

Crystal structure of Saccharomyces cerevisiae OMP synthase in complex with PRP(NH)P

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-functional Binders)

MG.1: 1 residues within 4Å: Ligands: 3R3.2 No protein-ligand interaction detected (PLIP) MG.3: 1 residues within 4Å: Ligands: 3R3.4 No protein-ligand interaction detected (PLIP)

2 x 3R3: [[[(2R,3R,4S,5R)-3,4-bis(oxidanyl)-5-(phosphonooxymethyl)oxolan-2-yl]oxy-oxidanyl-phosphoryl]amino]phosphonic acid(Non-covalent)

3R3.2: 15 residues within 4Å: Chain A: A.75, Y.76, K.77, D.132, D.133, V.134, M.135, T.136, A.137, G.138, T.139, A.140 Chain B: R.106, K.110 Ligands: MG.1 16 PLIP interactions: 12 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:Y.76, A:K.77, A:K.77, A:D.132, A:T.136, A:A.137, A:G.138, A:T.139, A:A.140, B:R.106, B:R.106, B:K.110, B:K.110 Water bridges: A:A.75, A:G.78 Salt bridges: A:K.77 3R3.4: 15 residues within 4Å: Chain A: R.106, K.110 Chain B: A.75, Y.76, K.77, D.132, D.133, V.134, M.135, T.136, A.137, G.138, T.139, A.140 Ligands: MG.3 16 PLIP interactions: 12 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:Y.76, B:K.77, B:K.77, B:D.132, B:T.136, B:A.137, B:G.138, B:T.139, B:A.140, A:R.106, A:R.106, A:K.110, A:K.110 Water bridges: B:A.75, B:G.78 Salt bridges: B:K.77

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bang, M.B. et al., Crystal structure of Saccharomyces cerevisiae OMP synthase in complex with PRP(NH)P. To Be Published

Release Date

2015-12-23

Peptides

Orotate phosphoribosyltransferase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Orotate phosphoribosyltransferase 1