SMTL ID : 4wn5.1 (1 other biounit)

Crystal structure of the C-terminal Per-Arnt-Sim (PASb) of human HIF-3alpha9 bound to 18:1-1-monoacylglycerol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.15 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 1 residues within 4Å: Ligands: P6G.4 No protein-ligand interaction detected (PLIP)

1 x MVC: MONOVACCENIN(Non-covalent)

MVC.2: 26 residues within 4Å: Chain A: F.9, S.11, H.13, M.17, F.19, I.26, V.29, A.42, Y.45, I.46, V.54, S.57, I.58, L.61, A.67, T.69, Y.72, F.74, L.82, T.84, T.86, A.88, C.104, H.106, F.107, L.108 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.9, A:F.9, A:F.19, A:I.26, A:V.29, A:A.42, A:I.58, A:F.74, A:F.74, A:F.74, A:T.84, A:T.86, A:A.88 Hydrogen bonds: A:L.108, A:L.108

2 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)

P6G.3: 10 residues within 4Å: Chain A: A.8, L.10, Q.66, Q.87, A.88, T.89, V.103, C.104, V.105, F.107 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Q.66 P6G.4: 7 residues within 4Å: Chain A: L.10, R.12, T.20, Y.21, V.91, V.103 Ligands: SO4.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.12 Water bridges: A:T.20, A:T.20

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fala, A.M. et al., Unsaturated fatty acids as high-affinity ligands of the C-terminal Per-ARNT-Sim domain from the Hypoxia-inducible factor 3 alpha. Sci Rep (2015)

Release Date

2015-08-05

Peptides

Hypoxia-inducible factor 3-alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Hypoxia-inducible factor 3-alpha

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