SMTL ID : 4wo1.1 (1 other biounit)

Crystal structure of the DAP12 transmembrane domain in lipid cubic phase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.14 Å

Oligo State

homo-dimer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 2 residues within 4Å: Chain A: D.16 Chain B: D.16 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.16, A:D.16, H2O.1, H2O.1, H2O.1

3 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.2: 2 residues within 4Å: Chain A: V.27 Ligands: OLC.3 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.27 OLC.3: 6 residues within 4Å: Chain A: V.27 Chain B: A.24, V.27, Y.28, G.31 Ligands: OLC.2 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:A.24, B:V.27, B:V.27, A:V.27 OLC.4: 8 residues within 4Å: Chain A: P.6, A.10, V.13 Chain B: V.8, G.11, I.12, G.15, L.19 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:I.12, B:L.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Knoblich, K. et al., Transmembrane Complexes of DAP12 Crystallized in Lipid Membranes Provide Insights into Control of Oligomerization in Immunoreceptor Assembly. Cell Rep (2015)

Release Date

2015-06-03

Peptides

TYRO protein tyrosine kinase-binding protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Membrane

We predict this structure to be a membrane protein.
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TYRO protein tyrosine kinase-binding protein

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