SMTL ID : 4woq.2 (1 other biounit)

Crystal Structures of CdNal from Clostridium difficile in complex with ketobutyric

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

4 x 2KT: 2-KETOBUTYRIC ACID(Non-covalent)

2KT.1: 3 residues within 4Å: Chain A: L.159, Y.182, R.186 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.159 Water bridges: A:L.159 2KT.2: 4 residues within 4Å: Chain B: L.159, Y.182, L.183, R.186 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:L.159, B:Y.182 2KT.3: 4 residues within 4Å: Chain C: S.158, L.159, D.160, R.186 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:R.186 Hydrogen bonds: C:S.158, C:L.159, C:D.160 2KT.4: 5 residues within 4Å: Chain D: L.159, D.180, Y.182, L.183, R.186 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:Y.182, D:L.183 Hydrogen bonds: D:L.159 Water bridges: D:D.160, D:Y.182

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, W.D. et al., Crystal Structures of CdNal from Clostridium difficile in complex with ketobutyric. to be published

Release Date

2015-10-21

Peptides

N-acetylneuraminate lyase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

C
E

D
G

N-acetylneuraminate lyase

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