SMTL ID : 4wor.1

Staphylococcal nuclease in complex with Ca2+ and thymidine-3'-5'-diphosphate (pdTp) at room temperature

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.21, R.35, D.40, T.41 Ligands: THP.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.21, A:D.40, A:T.41, H2O.1

1 x THP: THYMIDINE-3',5'-DIPHOSPHATE(Non-covalent)

THP.2: 12 residues within 4Å: Chain A: R.35, L.36, L.37, D.40, D.83, K.84, Y.85, R.87, L.89, Y.113, Y.115 Ligands: CA.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:R.35, A:Y.113, A:Y.113 Hydrogen bonds: A:Y.85, A:R.87 Water bridges: A:K.84, A:Y.85 Salt bridges: A:R.35, A:K.84, A:R.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wall, M.E. et al., Three-dimensional diffuse x-ray scattering from crystals of Staphylococcal nuclease. Proc. Natl. Acad. Sci. U.S.A. (1997)

Release Date

2014-10-29

Peptides

Thermonuclease: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Thermonuclease

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