SMTL ID : 4wou.1

Crystal Structure of Mtb PEPCK in complex with GDP and metals

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.12 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 16 residues within 4Å: Chain A: P.286, S.287, A.288, C.289, G.290, K.291, T.292, N.293, R.436, W.517, F.518, F.526, G.530, F.531, N.534 Ligands: MN.3 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:A.288, A:C.289, A:G.290, A:K.291, A:T.292, A:N.293, A:N.293, A:R.436, A:F.531, A:N.534 Water bridges: A:P.286, A:S.287, A:K.291, A:W.517, A:P.529, A:P.529 pi-Stacking: A:F.531, A:F.531 pi-Cation interactions: A:F.526

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 9 residues within 4Å: Chain A: E.99, T.102, I.104, T.115, N.116, N.117, R.250, L.483, P.484 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.102, A:N.116, A:N.117, A:R.250 Water bridges: A:N.116

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.3: 2 residues within 4Å: Chain A: T.292 Ligands: GDP.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.292, H2O.1, H2O.2, H2O.13, H2O.13

1 x ZN: ZINC ION(Non-covalent)

ZN.4: 3 residues within 4Å: Chain A: K.245, H.265, D.312 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.265, A:D.312, H2O.12, H2O.12, H2O.12

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.5: 4 residues within 4Å: Chain A: G.238, K.244, K.245, R.405 12 PLIP interactions: 12 interactions with chain A Water bridges: A:G.238, A:G.238, A:G.238, A:K.245, A:K.245, A:K.245, A:K.245, A:S.287, A:S.287, A:N.403 Salt bridges: A:K.245, A:R.405

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, H.L. et al., Crystal Structure of Mtb PEPCK in complex with GDP and metals. To Be Published

Release Date

2015-11-04

Peptides

Phosphoenolpyruvate carboxykinase [GTP]: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phosphoenolpyruvate carboxykinase [GTP]

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