SMTL ID : 4wov.3 (2 other biounits)

CRYSTAL STRUCTURE OF TYROSINE KINASE 2 JH2 (PSEUDO KINASE DOMAIN) COMPLEXED WITH BMS-066 AKA 2-METHOXY-N-({6-[3-METHYL-7-(METHYLAMINO)-3,5,8,10-TETRAAZATRICYCLO[7.3.0.0, 6]DODECA-1(9),2(6),4,7,11-PENTAEN-11-YL]PYRIDIN-2-YL}METHY L)ACETAMIDE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x 3SM: 2-methoxy-N-({6-[1-methyl-4-(methylamino)-1,6-dihydroimidazo[4,5-d]pyrrolo[2,3-b]pyridin-7-yl]pyridin-2-yl}methyl)acetamide(Non-covalent)

3SM.1: 19 residues within 4Å: Chain A: H.42, L.43, G.44, Q.45, G.46, V.51, V.88, K.90, T.135, E.136, Y.137, V.138, E.139, H.140, G.141, P.142, V.145, R.186, L.189 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:P.142 Hydrogen bonds: A:L.43, A:V.138, A:V.138 3SM.4: 18 residues within 4Å: Chain B: L.43, G.44, Q.45, V.51, V.88, K.90, T.135, E.136, Y.137, V.138, E.139, H.140, G.141, P.142, V.145, R.186, L.189, S.206 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:L.43, B:V.51, B:P.142 Hydrogen bonds: B:L.43, B:V.138, B:V.138

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 7 residues within 4Å: Chain A: H.273, R.277, H.279 Chain B: P.262, L.263, S.265, R.266 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B Salt bridges: A:H.273, A:R.277, A:H.279 Hydrogen bonds: B:L.263, B:S.265, B:R.266 SO4.3: 7 residues within 4Å: Chain A: G.46, T.47, T.49, N.182, N.187, P.208, G.209 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:T.47, A:T.47, A:T.49, A:N.182 Water bridges: A:K.90, A:K.90, A:N.187, A:N.187, A:V.210, A:R.223 Salt bridges: A:K.90 SO4.5: 6 residues within 4Å: Chain A: P.262, L.263, R.266 Chain B: H.273, R.277, H.279 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Salt bridges: B:H.273, B:R.277, B:H.279, A:R.266 Hydrogen bonds: A:L.263 SO4.6: 7 residues within 4Å: Chain B: G.46, T.47, T.49, N.182, N.187, P.208, G.209 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:T.47, B:T.47, B:T.49, B:N.182, B:N.187 Water bridges: B:T.47, B:V.210 SO4.7: 4 residues within 4Å: Chain B: H.140, R.192, L.193, G.194 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:L.193, B:G.194 Salt bridges: B:H.140

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tokarski, J.S. et al., Tyrosine Kinase 2-mediated Signal Transduction in T Lymphocytes Is Blocked by Pharmacological Stabilization of Its Pseudokinase Domain. J.Biol.Chem. (2015)

Release Date

2015-03-18

Peptides

Non-receptor tyrosine-protein kinase TYK2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Non-receptor tyrosine-protein kinase TYK2

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