SMTL ID : 4wpg.1

Group A Streptococcus GacA is an essential dTDP-4-dehydrorhamnose reductase (RmlD)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

monomer

Ligands

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 10 residues within 4Å: Chain A: E.5, I.7, L.24, R.27, V.29, L.58, Y.60, C.201, T.204, E.205 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.24, A:V.29, A:E.205 Hydrogen bonds: A:E.5, A:R.27, A:E.205, A:E.205

1 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.2: 8 residues within 4Å: Chain A: E.5, T.57, L.58, T.100, Y.151, T.204, Q.207, F.210 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.58, A:T.204 Hydrogen bonds: A:E.5, A:E.5, A:T.100

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 6 residues within 4Å: Chain A: F.166, V.182, V.183, Q.186, W.225, R.254 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Q.186 Salt bridges: A:R.254

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

van der Beek, S.L. et al., GacA is essential for Group A Streptococcus and defines a new class of monomeric dTDP-4-dehydrorhamnose reductases (RmlD). Mol.Microbiol. (2015)

Release Date

2015-09-09

Peptides

dTDP-4-dehydrorhamnose reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

dTDP-4-dehydrorhamnose reductase