SMTL ID : 4wpu.1

Crystal Structure of E83A mutant of Mtb PEPCK in complex with PEP and GDP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.26 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 15 residues within 4Å: Chain A: P.286, S.287, A.288, C.289, G.290, K.291, T.292, N.293, R.436, W.517, F.518, F.526, G.530, F.531, N.534 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:A.288, A:C.289, A:G.290, A:T.292, A:N.293, A:F.531, A:N.534 Water bridges: A:W.517, A:W.528, A:P.529, A:P.529 Salt bridges: A:K.291 pi-Stacking: A:F.518, A:F.531 pi-Cation interactions: A:F.526

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 9 residues within 4Å: Chain A: A.99, T.102, I.104, T.115, N.116, N.117, R.250, L.483, P.484 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.116, A:N.117, A:N.117, A:R.250 Water bridges: A:R.97, A:T.102, A:L.486

1 x PEP: PHOSPHOENOLPYRUVATE(Non-functional Binders)

PEP.3: 11 residues within 4Å: Chain A: A.96, R.97, Y.236, G.237, G.238, K.245, S.287, F.334, N.403, R.405, F.485 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:R.97, A:G.238, A:S.287, A:N.403 Water bridges: A:K.245, A:K.245 Salt bridges: A:R.97, A:K.245, A:R.405, A:R.405

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, H.L. et al., Crystal Structure of E83A mutant of Mtb PEPCK in complex with PEP and GDP. To Be Published

Release Date

2015-11-04

Peptides

Phosphoenolpyruvate carboxykinase [GTP]: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phosphoenolpyruvate carboxykinase [GTP]

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