SMTL ID : 4wqp.3 (2 other biounits)

Crystal structure of RORc in complex with a benzyl sulfonamide inverse agonist

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

hetero-2-1-mer

Ligands

2 x 3SX: N-[4-(4-acetylpiperazin-1-yl)benzyl]-N-(2-methylpropyl)-1-phenylmethanesulfonamide(Non-covalent)

3SX.1: 22 residues within 4Å: Chain A: C.40, Q.41, L.42, W.72, C.75, H.78, L.79, M.120, A.123, V.131, F.132, F.133, F.143, L.146, L.151, I.152, F.156, H.234, R.237, L.238, F.241 Ligands: SO4.2 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Q.41, A:W.72, A:H.78, A:L.79, A:V.131, A:F.133, A:F.143, A:L.146, A:L.151, A:I.152, A:F.156, A:R.237, A:L.238, A:F.241 3SX.3: 21 residues within 4Å: Chain C: C.40, Q.41, L.42, W.72, C.75, H.78, M.120, A.123, F.132, F.133, F.143, L.146, L.151, I.152, I.155, F.156, H.234, R.237, L.238, F.241 Ligands: SO4.4 12 PLIP interactions: 12 interactions with chain C Hydrophobic interactions: C:W.72, C:H.78, C:F.133, C:F.143, C:L.146, C:L.151, C:I.152, C:I.155, C:F.156, C:R.237, C:L.238, C:F.241

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: H.78, F.132, F.133, E.134 Ligands: 3SX.1 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:F.132, A:E.134 Water bridges: A:Q.41, A:H.78, A:E.81, A:G.135 Salt bridges: A:H.78 SO4.4: 5 residues within 4Å: Chain C: H.78, F.132, F.133, E.134 Ligands: 3SX.3 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:E.134 Water bridges: C:Q.41, C:Q.41, C:H.78, C:G.135 Salt bridges: C:H.78

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rene, O. et al., Minor Structural Change to Tertiary Sulfonamide RORc Ligands Led to Opposite Mechanisms of Action. Acs Med.Chem.Lett. (2015)

Release Date

2015-01-14

Peptides

Nuclear receptor ROR-gamma: AC
VAL-GLU-ARG-LEU-GLN-ILE-PHE-GLN-HIS-LEU-HIS-PRO-ILE: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
B

B
P

Nuclear receptor ROR-gamma

VAL-GLU-ARG-LEU-GLN-ILE-PHE-GLN-HIS-LEU-HIS-PRO-ILE

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