SMTL ID : 4wrl.1

Structure of the human CSF-1:CSF-1R complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-2-2-mer

Ligands

2 x NAG- GAL- SIA- FUC: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-GAL-SIA-FUC.1: 5 residues within 4Å: Chain A: P.37, H.38, N.54, T.56, Q.58 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:T.56, A:N.54 NAG-GAL-SIA-FUC.4: 3 residues within 4Å: Chain B: H.38, N.54, Q.58 No protein-ligand interaction detected (PLIP)

1 x NAG- GAL: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-GAL.2: 2 residues within 4Å: Chain A: N.134 Ligands: SIA.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.134

2 x NAG- GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-GAL-SIA.3: 3 residues within 4Å: Chain A: N.256, S.258, S.271 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.258, A:S.271 NAG-GAL-SIA.5: 4 residues within 4Å: Chain B: N.222, N.256, S.269, S.271 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.269, B:S.269, B:S.271

1 x SIA: N-acetyl-alpha-neuraminic acid(Non-functional Binders)

SIA.6: 1 residues within 4Å: Ligands: NAG-GAL.2 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 1 residues within 4Å: Chain A: N.26 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.26 NAG.8: 1 residues within 4Å: Chain B: N.134 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.134 NAG.9: 1 residues within 4Å: Chain B: N.26 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Felix, J. et al., Structure and Assembly Mechanism of the Signaling Complex Mediated by Human CSF-1. Structure (2015)

Release Date

2015-08-12

Peptides

Macrophage colony-stimulating factor 1 receptor: AB
Macrophage colony-stimulating factor 1: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
B

D
D

Macrophage colony-stimulating factor 1 receptor

Macrophage colony-stimulating factor 1

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