SMTL ID : 4wrn.1

Crystal structure of the polymerization region of human uromodulin/Tamm-Horsfall protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-dimer

Ligands

2 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 15 residues within 4Å: Chain A: D.23, K.24, E.53, W.71, A.72, D.74, R.75, E.120, E.162, P.163, Y.164, F.165, W.239, M.339, W.349 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.71, A:E.162, A:E.162, A:Y.164 GLC-GLC.2: 17 residues within 4Å: Chain B: N.21, D.23, K.24, E.53, W.71, A.72, D.74, R.75, E.120, E.162, P.163, Y.164, F.165, W.239, M.339, W.349, R.353 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:W.71, B:D.74, B:R.75, B:Y.164, B:R.353

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 12 residues within 4Å: Chain A: N.481, E.482, T.483, H.484, T.486, S.511, V.623 Chain B: R.417, E.419, K.426, D.458, N.459 7 PLIP interactions: 3 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:R.417, B:E.419, B:K.426, A:T.483, A:S.511 Hydrophobic interactions: A:E.482, A:T.483 NAG.4: 4 residues within 4Å: Chain A: A.215, D.216, S.361, N.407 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.361 NAG.7: 9 residues within 4Å: Chain A: E.419, K.426, D.458 Chain B: N.481, E.482, T.483, H.484, T.486, S.511 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:E.419, B:N.481, B:T.483

2 x ZN: ZINC ION(Non-covalent)

ZN.5: 4 residues within 4Å: Chain A: H.5, H.9, T.40, E.287 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.5, A:H.9, A:E.287, A:E.287 ZN.6: 4 residues within 4Å: Chain B: H.5, H.9, E.287, Y.292 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.5, B:H.9, B:E.287, B:E.287

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bokhove, M. et al., A structured interdomain linker directs self-polymerization of human uromodulin. Proc.Natl.Acad.Sci.USA (2016)

Release Date

2016-01-27

Peptides

Maltose-binding periplasmic protein,Uromodulin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Maltose-binding periplasmic protein,Uromodulin