SMTL ID : 4wsb.1

Bat Influenza A polymerase with bound vRNA promoter

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: D.435 Chain B: K.562, H.571 No protein-ligand interaction detected (PLIP)

16 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 5 residues within 4Å: Chain A: S.424, E.425, L.426, K.644, R.647 Ligand excluded by PLIP PO4.3: 5 residues within 4Å: Chain A: K.303, T.427, N.428, R.463, E.466 Ligand excluded by PLIP PO4.4: 2 residues within 4Å: Chain A: D.538, N.541 Ligand excluded by PLIP PO4.5: 7 residues within 4Å: Chain A: C.290, T.291, Q.292, R.293, R.410, N.705, P.707 Ligand excluded by PLIP PO4.6: 5 residues within 4Å: Chain B: D.314, N.315, T.316, K.317, K.490 Ligand excluded by PLIP PO4.7: 3 residues within 4Å: Chain B: R.569, T.579, R.580 Ligand excluded by PLIP PO4.8: 8 residues within 4Å: Chain B: G.283, G.284, N.285, E.286 Chain C: R.224, F.225 Ligands: PO4.14, PO4.17 Ligand excluded by PLIP PO4.9: 8 residues within 4Å: Chain A: E.589, R.591, R.592 Chain B: F.521, G.522, L.559, F.560, D.563 Ligand excluded by PLIP PO4.10: 5 residues within 4Å: Chain B: N.25, R.507 Chain C: E.670, I.674, G.677 Ligand excluded by PLIP PO4.11: 8 residues within 4Å: Chain B: W.318, N.319, Q.322, F.421, N.422, M.423, S.425, S.453 Ligand excluded by PLIP PO4.12: 4 residues within 4Å: Chain B: R.611, N.612 Chain C: L.133, T.134 Ligand excluded by PLIP PO4.13: 2 residues within 4Å: Chain B: R.248, D.454 Ligand excluded by PLIP PO4.14: 4 residues within 4Å: Chain B: G.283, G.284, K.662 Ligands: PO4.8 Ligand excluded by PLIP PO4.15: 5 residues within 4Å: Chain C: R.272, E.313, Q.314, Q.346, S.527 Ligand excluded by PLIP PO4.16: 3 residues within 4Å: Chain C: M.61, K.62, Y.63 Ligand excluded by PLIP PO4.17: 6 residues within 4Å: Chain B: G.283, E.286 Chain C: R.152, R.224, F.225 Ligands: PO4.8 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Reich, S. et al., Structural insight into cap-snatching and RNA synthesis by influenza polymerase. Nature (2014)

Release Date

2014-11-19

Peptides

Polymerase PA: A
RNA-directed RNA polymerase catalytic subunit: B
Polymerase PB2: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Polymerase PA

RNA-directed RNA polymerase catalytic subunit

Polymerase PB2

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