SMTL ID : 4wsj.3 (3 other biounits)

Crystal structure of a bacterial fucodiase in complex with 1-((1R,2R,3R,4R,5R,6R)-2,3,4-trihydroxy-5-methyl-7-azabicyclo[4.1.0]heptan-7-yl)ethan-1-one

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.228, R.237, H.238 Ligands: 3U3.2 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.228, A:R.237, A:H.238

1 x 3U3: N-[(1S,2R,3R,4S,5R)-3,4,5-trihydroxy-2-methylcyclohexyl]acetamide(Covalent)

3U3.2: 11 residues within 4Å: Chain A: H.32, E.53, W.54, H.101, H.102, Y.144, W.193, D.195, R.228, W.282 Ligands: SO4.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:W.193, A:D.195, A:W.282 Hydrogen bonds: A:H.32, A:E.53, A:E.53, A:W.54 Water bridges: A:W.282

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, J. et al., In vitroandin vivocomparative and competitive activity-based protein profiling of GH29 alpha-l-fucosidases. Chem Sci (2015)

Release Date

2014-11-05

Peptides

Alpha-L-fucosidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Alpha-L-fucosidase

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