SMTL ID : 4wsr.1 (1 other biounit)

The crystal structure of hemagglutinin form A/chicken/New York/14677-13/1998

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-trimer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: T.39, Q.40, N.299, K.315 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.40 NAG-NAG.2: 5 residues within 4Å: Chain B: T.39, Q.40, N.299, V.300, K.315 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.39 NAG-NAG.3: 1 residues within 4Å: Chain C: N.294 No protein-ligand interaction detected (PLIP)

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 2 residues within 4Å: Chain A: N.294, K.295 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.294 NAG.5: 2 residues within 4Å: Chain B: Q.19, N.27 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.19 NAG.6: 1 residues within 4Å: Chain C: N.15 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.15 NAG.7: 1 residues within 4Å: Chain C: N.27 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.27 NAG.8: 3 residues within 4Å: Chain C: T.39, N.299, K.315 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:K.315, C:K.315

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, H. et al., Structure and receptor binding preferences of recombinant hemagglutinins from avian and human h6 and h10 influenza a virus subtypes. J.Virol. (2015)

Release Date

2015-02-25

Peptides

Hemagglutinin: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Hemagglutinin

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