SMTL ID : 4wss.2 (1 other biounit)

The crystal structure of hemagglutinin form A/chicken/New York/14677-13/1998 in complex with LSTa

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-trimer

Ligands

2 x NAG- GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-GAL-SIA.1: 13 residues within 4Å: Chain A: Y.95, S.133, G.134, V.135, T.136, S.137, W.153, I.155, H.184, E.191, L.195, Q.227, G.229 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Q.227, A:Y.95, A:V.135, A:S.137, A:H.184, A:Q.227, A:Q.227 Hydrophobic interactions: A:W.153, A:I.155 NAG-GAL-SIA.3: 13 residues within 4Å: Chain C: Y.95, S.133, G.134, V.135, T.136, S.137, W.153, I.155, H.184, E.191, L.195, Q.227, G.229 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:Q.227, C:Y.95, C:V.135, C:T.136, C:S.137, C:H.184, C:Q.227, C:Q.227, C:Q.227, C:G.229 Hydrophobic interactions: C:W.153, C:I.155

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 4 residues within 4Å: Chain C: T.39, Q.40, N.299, K.315 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:Q.40

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 3 residues within 4Å: Chain A: T.39, N.299, K.315 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.315 Hydrogen bonds: A:T.39 NAG.5: 1 residues within 4Å: Chain A: N.27 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.27 NAG.6: 1 residues within 4Å: Chain B: N.27 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, H. et al., Structure and receptor binding preferences of recombinant hemagglutinins from avian and human h6 and h10 influenza a virus subtypes. J.Virol. (2015)

Release Date

2015-02-25

Peptides

Hemagglutinin: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
D

C
F

Hemagglutinin

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