SMTL ID : 4wsv.1

The crystal structure of hemagglutinin from A/Taiwan/1/2013 in complex with 6'SLN

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

hetero-3-3-mer

Ligands

9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain A: N.16 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.16 NAG.2: 2 residues within 4Å: Chain A: Q.20, N.28 No protein-ligand interaction detected (PLIP) NAG.3: 2 residues within 4Å: Chain A: N.172, T.245 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:T.245 Hydrogen bonds: A:N.172, A:T.245, A:T.245 NAG.5: 1 residues within 4Å: Chain B: N.16 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.16 NAG.6: 2 residues within 4Å: Chain B: Q.20, N.28 No protein-ligand interaction detected (PLIP) NAG.7: 4 residues within 4Å: Chain B: N.172, T.174, E.210, T.245 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.172 NAG.8: 1 residues within 4Å: Chain C: N.16 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.16 NAG.9: 3 residues within 4Å: Chain C: Q.20, D.22, N.28 No protein-ligand interaction detected (PLIP) NAG.10: 3 residues within 4Å: Chain C: N.172, T.174, T.245 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:N.172, C:T.245, C:T.245

2 x SIA: N-acetyl-alpha-neuraminic acid(Non-covalent)

SIA.4: 11 residues within 4Å: Chain A: Y.96, G.135, V.136, T.137, N.138, W.155, H.186, V.193, L.197, Q.229, S.231 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.197 Hydrogen bonds: A:Y.96, A:G.135, A:V.136, A:V.136, A:T.137, A:N.138, A:Q.229, A:Q.229, A:S.231, A:S.231 SIA.11: 10 residues within 4Å: Chain C: Y.96, V.136, T.137, N.138, W.155, L.189, G.228, Q.229, R.230, S.231 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:T.137, C:N.138, C:Q.229, C:R.230, C:S.231, C:S.231

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, H. et al., Structure and receptor binding preferences of recombinant hemagglutinins from avian and human h6 and h10 influenza a virus subtypes. J.Virol. (2015)

Release Date

2015-02-25

Peptides

Hemagglutinin HA1 chain: ABC
Hemagglutinin HA2 chain: DEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
E

D
B

E
D

F
F

Hemagglutinin HA1 chain

Hemagglutinin HA2 chain

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