SMTL ID : 4wvd.1 (1 other biounit)

Identification of a novel FXR ligand that regulates metabolism

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-1-1-mer

Ligands

4 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 2 residues within 4Å: Ligands: FMT.2, FMT.4 No protein-ligand interaction detected (PLIP) FMT.2: 2 residues within 4Å: Ligands: FMT.1, FMT.3 No protein-ligand interaction detected (PLIP) FMT.3: 1 residues within 4Å: Ligands: FMT.2 No protein-ligand interaction detected (PLIP) FMT.4: 1 residues within 4Å: Ligands: FMT.1 No protein-ligand interaction detected (PLIP)

1 x IVM: (2aE,4E,5'S,6S,6'R,7S,8E,11R,13R,15S,17aR,20R,20aR,20bS)-6'-[(2S)-butan-2-yl]-20,20b-dihydroxy-5',6,8,19-tetramethyl-17 -oxo-3',4',5',6,6',10,11,14,15,17,17a,20,20a,20b-tetradecahydro-2H,7H-spiro[11,15-methanofuro[4,3,2-pq][2,6]benzodioxacy clooctadecine-13,2'-pyran]-7-yl 2,6-dideoxy-4-O-(2,6-dideoxy-3-O-methyl-alpha-L-arabino-hexopyranosyl)-3-O-methyl-alpha-L-arabino-hexopyranoside(Non-covalent)

IVM.5: 14 residues within 4Å: Chain B: R.21, K.29, E.33, N.40, L.44, M.47, A.48, N.50, H.51, R.88, S.89, I.92, L.105, M.122 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:H.51, B:R.88, B:L.105, B:L.105 Hydrogen bonds: B:N.40, B:N.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jin, L. et al., The antiparasitic drug ivermectin is a novel FXR ligand that regulates metabolism. Nat Commun (2013)

Release Date

2015-02-11

Peptides

Nuclear receptor corepressor 1: A
Bile acid receptor: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
A

Nuclear receptor corepressor 1

Bile acid receptor

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