- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FE: FE (III) ION(Non-covalent)
- 8 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 11 residues within 4Å:- Chain A: V.67, F.70, E.103, H.106, E.161, T.164, W.192, H.196
- Ligands: FE.1, GOL.4, SO4.9
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:T.164, A:T.164
GOL.3: 9 residues within 4Å:- Chain A: Y.43, Y.59, G.63, V.66, L.136, W.167, M.238, F.241
- Ligands: GOL.4
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Y.43, A:Y.43, A:G.63
- Water bridges: A:V.66
GOL.4: 11 residues within 4Å:- Chain A: G.63, V.66, V.67, W.110, I.160, T.164, W.167, W.192, M.238
- Ligands: GOL.2, GOL.3
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:T.164
GOL.5: 4 residues within 4Å:- Chain A: R.9, T.10, P.12, L.13
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.9, A:R.9, A:L.13
GOL.12: 11 residues within 4Å:- Chain B: V.67, F.70, E.103, H.106, E.161, T.164, W.192, H.196
- Ligands: FE.11, GOL.14, SO4.19
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:T.164
GOL.13: 9 residues within 4Å:- Chain B: Y.43, Y.59, G.63, V.66, L.136, W.167, M.238, F.241
- Ligands: GOL.14
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:Y.43, B:Y.43, B:G.63
- Water bridges: B:V.66
GOL.14: 11 residues within 4Å:- Chain B: G.63, V.66, V.67, W.110, I.160, T.164, W.167, W.192, M.238
- Ligands: GOL.12, GOL.13
No protein-ligand interaction detected (PLIP)GOL.15: 4 residues within 4Å:- Chain B: R.9, T.10, P.12, L.13
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.9, B:R.9, B:L.13
- 10 x SO4: SULFATE ION(Non-functional Binders)
SO4.6: 2 residues within 4Å:- Chain A: R.94, R.98
5 PLIP interactions:4 interactions with chain A, 1 interactions with chain B- Water bridges: A:R.98, A:R.98, B:N.105
- Salt bridges: A:R.94, A:R.98
SO4.7: 3 residues within 4Å:- Chain A: R.101, N.105, Y.109
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.105
- Salt bridges: A:R.101
SO4.8: 2 residues within 4Å:- Chain A: R.98
- Chain B: R.101
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Salt bridges: A:R.98, B:R.101
SO4.9: 9 residues within 4Å:- Chain A: F.70, N.99, V.102, E.103, E.161, D.200, H.203
- Ligands: FE.1, GOL.2
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.99
- Salt bridges: A:H.203
SO4.10: 6 residues within 4Å:- Chain A: H.86, P.87, G.88, E.89, D.90, M.91
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:G.88, A:E.89, A:D.90, A:D.90, A:M.91
SO4.16: 2 residues within 4Å:- Chain B: R.94, R.98
5 PLIP interactions:4 interactions with chain B, 1 interactions with chain A- Water bridges: B:R.98, B:R.98, A:N.105
- Salt bridges: B:R.94, B:R.98
SO4.17: 3 residues within 4Å:- Chain B: R.101, N.105, Y.109
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.105, B:Y.109
- Salt bridges: B:R.101
SO4.18: 2 residues within 4Å:- Chain A: R.101
- Chain B: R.98
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Salt bridges: B:R.98, A:R.101
SO4.19: 9 residues within 4Å:- Chain B: F.70, N.99, V.102, E.103, E.161, D.200, H.203
- Ligands: FE.11, GOL.12
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:E.103, B:E.161
- Salt bridges: B:H.203
SO4.20: 6 residues within 4Å:- Chain B: H.86, P.87, G.88, E.89, D.90, M.91
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:G.88, B:E.89, B:D.90, B:M.91
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Rui, Z. et al., Microbial biosynthesis of medium-chain 1-alkenes by a nonheme iron oxidase. Proc.Natl.Acad.Sci.USA (2014)
- Release Date
- 2014-12-24
- Peptides
- TENA/THI-4 family protein: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FE: FE (III) ION(Non-covalent)
- 8 x GOL: GLYCEROL(Non-functional Binders)
- 10 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Rui, Z. et al., Microbial biosynthesis of medium-chain 1-alkenes by a nonheme iron oxidase. Proc.Natl.Acad.Sci.USA (2014)
- Release Date
- 2014-12-24
- Peptides
- TENA/THI-4 family protein: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
B