SMTL ID : 4wxq.1

Crystal Structure of the Myocilin Olfactomedin Domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.153, N.201, A.202, I.250, D.251 Ligands: NA.9 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.153, A:A.202, A:I.250, A:D.251, H2O.3

7 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)

P6G.2: 11 residues within 4Å: Chain A: G.25, E.26, P.27, Y.215, D.219, A.220, T.221, P.239, F.240, K.241 Ligands: P6G.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.219, A:K.241 P6G.3: 9 residues within 4Å: Chain A: P.47, K.48, Y.103, D.157, E.158, A.159, G.160, P.254, L.255 No protein-ligand interaction detected (PLIP) P6G.4: 6 residues within 4Å: Chain A: E.113, S.114, R.115, T.116, E.132, Y.138 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.115, A:R.115, A:T.116, A:T.116 P6G.5: 5 residues within 4Å: Chain A: G.25, E.26, P.27, R.243 Ligands: P6G.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.26 P6G.6: 4 residues within 4Å: Chain A: G.140, P.143, R.195, Q.197 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.197 P6G.7: 5 residues within 4Å: Chain A: E.121, T.124, T.126, V.127, K.128 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.128 P6G.8: 12 residues within 4Å: Chain A: Y.144, S.145, W.146, G.147, T.150, A.200, N.201, N.242, S.247, S.248, M.249, I.250 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.144, A:W.146

1 x NA: SODIUM ION(Non-functional Binders)

NA.9: 7 residues within 4Å: Chain A: G.99, A.100, V.101, D.153, L.154, D.251 Ligands: CA.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.154

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Donegan, R.K. et al., Structural basis for misfolding in myocilin-associated glaucoma. Hum.Mol.Genet. (2015)

Release Date

2015-04-01

Peptides

Myocilin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Myocilin