SMTL ID : 4wxu.1

Crystal Structure of the Selenomthionine Incorporated Myocilin Olfactomedin Domain E396D Variant.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 7 residues within 4Å: Chain A: D.153, N.201, A.202, F.203, I.250, D.251 Ligands: NA.7 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.153, A:A.202, A:I.250, A:D.251, H2O.6

3 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)

P6G.2: 11 residues within 4Å: Chain A: P.47, K.48, Y.103, V.156, D.157, E.158, A.159, G.160, P.254, L.255, K.257 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.48, A:Y.103, A:K.257 P6G.3: 5 residues within 4Å: Chain A: T.32, Y.244, N.264, L.265, N.266 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.266 P6G.4: 5 residues within 4Å: Chain A: E.26, P.27, L.28, T.29, R.243 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:P.27, A:T.29, A:R.243

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 9 residues within 4Å: Chain A: W.23, V.24, G.25, E.26, P.27, P.239, F.240, K.241, Y.270 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.24, A:K.241 GOL.6: 12 residues within 4Å: Chain A: W.43, M.44, R.45, D.46, P.47, V.101, V.102, V.156, D.251, Y.252, N.253, F.260 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.45, A:R.45, A:V.102, A:N.253 Water bridges: A:V.156, A:D.251

1 x NA: SODIUM ION(Non-functional Binders)

NA.7: 7 residues within 4Å: Chain A: G.99, A.100, V.101, D.153, L.154, D.251 Ligands: CA.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Donegan, R.K. et al., Structural basis for misfolding in myocilin-associated glaucoma. Hum.Mol.Genet. (2015)

Release Date

2015-04-01

Peptides

Myocilin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Myocilin

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