SMTL ID : 4wxx.2 (1 other biounit)

The crystal structure of human DNMT1(351-1600)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.62 Å

Oligo State

monomer

Ligands

5 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.1127, C.1129, C.1136, H.1153 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.1127, A:C.1129, A:C.1136, A:H.1153 ZN.2: 4 residues within 4Å: Chain A: H.444, C.471, C.544, C.547 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.444, A:C.471, A:C.544, A:C.547 ZN.3: 6 residues within 4Å: Chain A: C.315, G.316, C.318, C.321, C.337, Q.338 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.315, A:C.318, A:C.321, A:C.337 ZN.4: 5 residues within 4Å: Chain A: C.304, G.305, C.307, C.310, C.342 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.304, A:C.307, A:C.310, A:C.342 ZN.5: 4 residues within 4Å: Chain A: C.4, C.7, C.65, H.69 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.4, A:C.7, A:C.65, A:H.69

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.6: 18 residues within 4Å: Chain A: F.796, S.797, G.798, G.800, G.801, L.802, E.819, M.820, W.821, E.840, D.841, C.842, G.874, P.876, L.898, N.1229, A.1230, V.1231 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:S.797, A:G.801, A:L.802, A:M.820, A:W.821, A:D.841, A:C.842, A:N.1229, A:V.1231 Water bridges: A:D.794, A:S.803, A:G.874 pi-Stacking: A:F.796

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Z.M. et al., Crystal Structure of Human DNA Methyltransferase 1. J.Mol.Biol. (2015)

Release Date

2015-07-15

Peptides

DNA (cytosine-5)-methyltransferase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

DNA (cytosine-5)-methyltransferase 1

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