SMTL ID : 4wyj.1

Adenovirus 3 head domain mutant V239D

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

homo-trimer

Ligands

10 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: K.24, S.52, D.53, Y.54 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.53, A:Y.54 Water bridges: A:E.21 Salt bridges: A:K.24 SO4.2: 5 residues within 4Å: Chain A: T.57, K.60, T.175, T.176, Q.177 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.177 Salt bridges: A:K.60 SO4.3: 3 residues within 4Å: Chain A: K.24, Q.25, N.26 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.25, A:N.26, A:N.26 Salt bridges: A:K.24 SO4.4: 5 residues within 4Å: Chain A: M.49, T.179 Chain B: T.120, H.121, E.123 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Salt bridges: B:H.121 Hydrogen bonds: A:T.179 SO4.5: 4 residues within 4Å: Chain B: K.24, S.52, D.53, Y.54 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:D.53, B:D.53, B:D.53, B:Y.54 Water bridges: B:K.24 Salt bridges: B:K.24 SO4.6: 5 residues within 4Å: Chain B: I.20, Y.22, N.67, E.69, S.84 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.69 Water bridges: B:N.67 SO4.7: 4 residues within 4Å: Chain C: K.24, S.52, D.53, Y.54 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:D.53, C:D.53, C:Y.54 Salt bridges: C:K.24 SO4.8: 5 residues within 4Å: Chain B: T.179, I.181 Chain C: T.120, H.121, E.123 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain B Salt bridges: C:H.121 Hydrogen bonds: B:T.179, B:T.179 SO4.9: 3 residues within 4Å: Chain C: K.60, T.176, Q.177 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Q.177 Salt bridges: C:K.60 SO4.10: 5 residues within 4Å: Chain C: I.19, I.20, N.67, E.69, S.84 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:I.20, C:E.69 Water bridges: C:N.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Richter, M. et al., Preclinical safety and efficacy studies with an affinity-enhanced epithelial junction opener and PEGylated liposomal doxorubicin. Mol Ther Methods Clin Dev (2015)

Release Date

2015-07-01

Peptides

Fiber protein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Fiber protein