SMTL ID : 4wyl.1

Mutant K18E of 3D polymerase from Foot-and-Moth Disease Virus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: Y.81, R.84, P.209, Q.210, N.312, L.328, Y.331, T.332, M.333 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:P.209, A:N.312, A:L.328, A:M.333 Water bridges: A:T.332, A:T.332 GOL.2: 2 residues within 4Å: Chain A: Y.346, L.348 No protein-ligand interaction detected (PLIP) GOL.3: 9 residues within 4Å: Chain A: V.236, W.237, D.238, P.366, A.367, D.368, F.374, V.375, H.378 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:V.236, A:D.238, A:A.367, A:D.368, A:D.368, A:V.375, A:V.375

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 4 residues within 4Å: Chain A: M.111, E.112, R.128, I.189 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.189 Hydrogen bonds: A:E.112 Salt bridges: A:R.128

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.5: 4 residues within 4Å: Chain A: D.238, V.239, D.240, D.339 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.238, A:D.240

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferrer-Orta, C. et al., Multifunctionality of a picornavirus polymerase domain: nuclear localization signal and nucleotide recognition. J.Virol. (2015)

Release Date

2015-05-06

Peptides

RNA-directed RNA polymerase 3D-POL: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA-directed RNA polymerase 3D-POL