SMTL ID : 4wyw.1

Mutant K20E of 3D polymerase from Foot-and-Mouth Disease Virus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x 3PO: TRIPHOSPHATE(Non-covalent)

3PO.1: 6 residues within 4Å: Chain A: R.168, K.172, R.179, Y.241, S.242, A.243 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.241, A:A.243 Water bridges: A:F.244 Salt bridges: A:R.168, A:K.172, A:K.172

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: Y.323, E.324, T.330, Y.346 No protein-ligand interaction detected (PLIP) GOL.3: 7 residues within 4Å: Chain A: G.129, A.130, L.131, D.133, T.138, V.139, G.140 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.131 GOL.4: 9 residues within 4Å: Chain A: V.236, W.237, D.238, P.366, A.367, D.368, F.374, V.375, H.378 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:V.236, A:D.238, A:D.238, A:A.367, A:D.368, A:V.375, A:V.375 GOL.5: 8 residues within 4Å: Chain A: Y.81, R.84, P.209, N.312, L.328, Y.331, T.332, M.333 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.312, A:L.328, A:T.332, A:T.332, A:M.333

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.6: 4 residues within 4Å: Chain A: M.111, E.112, R.128, I.189 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.189 Hydrogen bonds: A:E.112 Water bridges: A:R.128, A:R.128 Salt bridges: A:R.128

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferrer-Orta, C. et al., Multifunctionality of a picornavirus polymerase domain: nuclear localization signal and nucleotide recognition. J.Virol. (2015)

Release Date

2015-05-06

Peptides

RNA-directed RNA polymerase 3D-POL: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA-directed RNA polymerase 3D-POL