SMTL ID : 4wyy.1

Crystal Structure of P. aeruginosa AmpC

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.28 Å

Oligo State

monomer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: R.147, Y.149, E.271, M.290, A.291, K.314, T.315 Ligands: 3VT.6 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.147, A:R.147, A:M.290, A:K.314, A:K.314 Water bridges: A:T.315, A:N.345 GOL.2: 5 residues within 4Å: Chain A: S.287, T.288, A.291, N.345 Ligands: 3VT.6 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.287 Water bridges: A:T.288, A:A.291, A:S.317, A:N.342 GOL.3: 3 residues within 4Å: Chain A: A.128, Q.129, D.132 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.128 GOL.4: 6 residues within 4Å: Chain A: P.240, E.241, R.245, A.248, Q.249, D.252 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.245, A:Q.249, A:D.252 Water bridges: A:E.241

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.5: 5 residues within 4Å: Chain A: S.317, T.318, N.319, N.342 Ligands: 3VT.6 No protein-ligand interaction detected (PLIP)

1 x 3VT: [(3R)-1-hydroxy-4,5-dimethyl-6-(pyrazin-2-yloxy)-1,3-dihydro-2,1-benzoxaborol-3-yl]acetic acid(Covalent)

3VT.6: 16 residues within 4Å: Chain A: G.61, S.62, L.117, Q.118, Y.149, N.151, Y.221, T.315, G.316, S.317, T.318, N.345, R.348 Ligands: GOL.1, GOL.2, DMS.5 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.117, A:Q.118, A:Y.149 Hydrogen bonds: A:S.62, A:Q.118, A:Y.149, A:S.317, A:S.317, A:N.345 Water bridges: A:S.317 Salt bridges: A:K.314, A:R.348 pi-Stacking: A:Y.221

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McKinney, D.C. et al., 4,5-Disubstituted 6-Aryloxy-1,3-dihydrobenzo[c][1,2]oxaboroles Are Broad-Spectrum Serine beta-Lactamase Inhibitors. ACS Infect Dis (2015)

Release Date

2015-08-05

Peptides

Beta-lactamase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-lactamase

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