SMTL ID : 4wzm.1

Mutant K18E of RNA dependent RNA polymerase from Foot-and-Mouth Disease Virus complexed with RNA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.52 Å

Oligo State

monomer

Ligands

1 x A- U- G- G- G- C- C- C: RNA template(Non-covalent)

A-U-G-G-G-C-C-C.1: 36 residues within 4Å: Chain A: M.16, E.18, K.20, G.107, L.108, D.109, E.112, D.114, T.115, A.116, R.128, F.162, K.164, D.165, V.181, V.183, I.189, R.193, H.204, V.215, G.216, C.217, N.218, S.298, G.299, C.300, S.301, S.304, Y.336, R.461 Ligands: U-G-G-G-C-C-C.2, U-G-G-G-C-C-C.2, U-G-G-G-C-C-C.2, U-G-G-G-C-C-C.2, U-G-G-G-C-C-C.2, U-G-G-G-C-C-C.2 Protein-ligand interaction information (PLIP) not available

1 x U- G- G- G- C- C- C: RNA primer(Non-covalent)

U-G-G-G-C-C-C.2: 23 residues within 4Å: Chain A: P.113, S.304, Y.336, G.337, D.338, D.339, L.386, K.387, R.388, I.411, R.416, T.419, E.422, K.423, S.426, V.427, L.430 Ligands: A-U-G-G-G-C-C-C.1, A-U-G-G-G-C-C-C.1, A-U-G-G-G-C-C-C.1, A-U-G-G-G-C-C-C.1, A-U-G-G-G-C-C-C.1, A-U-G-G-G-C-C-C.1 Protein-ligand interaction information (PLIP) not available

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 9 residues within 4Å: Chain A: Y.81, R.84, P.209, Q.210, N.312, L.328, Y.331, T.332, M.333 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.84, A:R.84, A:L.328, A:T.332, A:M.333 GOL.4: 5 residues within 4Å: Chain A: N.207, G.208, P.209, Q.210, R.225 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.210, A:R.225

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.5: 7 residues within 4Å: Chain A: D.238, V.239, D.240, D.339, I.340, A.367, T.384 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.339

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.6: 6 residues within 4Å: Chain A: D.63, T.64, K.65, C.249, S.250, D.251 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.63, A:T.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferrer-Orta, C. et al., Multifunctionality of a picornavirus polymerase domain: nuclear localization signal and nucleotide recognition. J.Virol. (2015)

Release Date

2015-05-06

Peptides

RNA dependent RNA polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA dependent RNA polymerase