SMTL ID : 4wzn.1 (1 other biounit)

CRYSTAL STRUCTURE OF THE 2B PROTEIN SOLUBLE DOMAIN FROM HEPATITIS A VIRUS

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-10-mer

Ligands

10 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: W.90, R.91 Chain B: R.98 Chain H: Y.79, R.101, S.208 6 PLIP interactions: 1 interactions with chain B, 5 interactions with chain H Hydrogen bonds: B:R.98, H:Y.79, H:R.101, H:R.101 Water bridges: H:S.208, H:S.208 GOL.2: 3 residues within 4Å: Chain A: E.82, H.83 Chain B: A.201 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.83 GOL.3: 6 residues within 4Å: Chain C: W.90, R.91 Chain D: R.98 Chain J: Y.79, R.101, S.208 6 PLIP interactions: 1 interactions with chain D, 5 interactions with chain J Hydrogen bonds: D:R.98, J:Y.79, J:R.101, J:R.101 Water bridges: J:S.208, J:S.208 GOL.4: 3 residues within 4Å: Chain C: E.82, H.83 Chain D: A.201 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:H.83 GOL.5: 3 residues within 4Å: Chain E: W.90, R.91 Chain F: R.98 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:R.98 GOL.6: 3 residues within 4Å: Chain E: E.82, H.83 Chain F: A.201 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:H.83 GOL.7: 6 residues within 4Å: Chain F: Y.79, R.101, S.208 Chain G: W.90, R.91 Chain H: R.98 6 PLIP interactions: 5 interactions with chain F, 1 interactions with chain H Hydrogen bonds: F:Y.79, F:R.101, F:R.101, H:R.98 Water bridges: F:S.208, F:S.208 GOL.8: 3 residues within 4Å: Chain G: E.82, H.83 Chain H: A.201 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:H.83 GOL.9: 6 residues within 4Å: Chain B: Y.79, R.101, S.208 Chain I: W.90, R.91 Chain J: R.98 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain J Hydrogen bonds: B:Y.79, B:R.101, B:R.101, J:R.98 Water bridges: B:S.208, B:S.208 GOL.10: 3 residues within 4Å: Chain I: E.82, H.83 Chain J: A.201 1 PLIP interactions: 1 interactions with chain I Hydrogen bonds: I:H.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vives-Adrian, L. et al., Structural Basis for Host Membrane Remodeling Induced by Protein 2B of Hepatitis A Virus. J.Virol. (2015)

Release Date

2015-01-28

Peptides

Genome polyprotein: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

G
A

H
B

I
A

J
B

Genome polyprotein

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