SMTL ID : 4wzq.1

Mutant K20E of RNA dependent RNA polymerase 3D from Foot-and-Mouth disease Virus complexed with RNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x A- U- G- G- G- C- C- C: RNA template(Non-covalent)

A-U-G-G-G-C-C-C.1: 36 residues within 4Å: Chain A: M.16, E.20, G.107, L.108, D.109, E.112, T.115, A.116, R.128, F.162, K.164, V.181, V.183, I.189, R.193, H.204, V.215, G.216, C.217, N.218, S.298, G.299, C.300, S.301, A.302, T.303, S.304, Y.336, S.426, R.461 Ligands: U-G-G-G-C-C-C.2, U-G-G-G-C-C-C.2, U-G-G-G-C-C-C.2, U-G-G-G-C-C-C.2, U-G-G-G-C-C-C.2, U-G-G-G-C-C-C.2 Protein-ligand interaction information (PLIP) not available

1 x U- G- G- G- C- C- C: RNAprimer(Non-covalent)

U-G-G-G-C-C-C.2: 26 residues within 4Å: Chain A: D.114, F.134, S.304, Y.336, G.337, D.338, D.339, L.386, K.387, R.388, M.403, I.411, R.416, T.419, E.422, K.423, S.426, V.427, L.430 Ligands: A-U-G-G-G-C-C-C.1, A-U-G-G-G-C-C-C.1, A-U-G-G-G-C-C-C.1, A-U-G-G-G-C-C-C.1, A-U-G-G-G-C-C-C.1, A-U-G-G-G-C-C-C.1, A-U-G-G-G-C-C-C.1 Protein-ligand interaction information (PLIP) not available

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.3: 5 residues within 4Å: Chain A: D.238, V.239, D.240, D.339, T.384 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.339

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferrer-Orta, C. et al., Multifunctionality of a picornavirus polymerase domain: nuclear localization signal and nucleotide recognition. J.Virol. (2015)

Release Date

2015-05-06

Peptides

RNA dependent-RNA polymerase 3D: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA dependent-RNA polymerase 3D