SMTL ID : 4x0z.1

JC Polyomavirus genotype 3 VP1 in complex with GM1 oligosaccharide

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.85 Å
Oligo State
homo-pentamer
Ligands
2 x GAL- NGA- GAL- SIA: beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-4)-[N-acetyl-alpha-neuraminic acid-(2-3)]beta-D-galactopyranose(Non-functional Binders)
1 x BGC- GAL- NGA- GAL- SIA: beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-4)-[N-acetyl-alpha-neuraminic acid-(2-3)]beta-D-galactopyranose-(1-4)-beta-D-glucopyranose(Non-functional Binders)
22 x GOL: GLYCEROL(Non-functional Binders)(Non-covalent)
13 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)(Non-covalent)
10 x K: POTASSIUM ION(Non-covalent)(Non-functional Binders)
Links
RCSB   PDBe   PDBj   PDBsum   CATH   PLIP
Citation
Stroh, L.J. et al., The Greater Affinity of JC Polyomavirus Capsid for alpha 2,6-Linked Lactoseries Tetrasaccharide c than for Other Sialylated Glycans Is a Major Determinant of Infectivity. J.Virol. (2015)
Release Date
2015-04-22
Peptides
Major capsid protein: ABCDE
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
D
E
E

Major capsid protein

Toggle Identical (AE) Toggle Identical (BD)

Related Entries With Identical Sequence

4x0y.1 | 4x10.1 | 4x11.1 | 4x12.1 | 4x13.1